Gene Information

Name : sctR, cdsR (PUV_01460)
Accession : YP_004650950.1
Strain : Parachlamydia acanthamoebae UV-7
Genome accession: NC_015702
Putative virulence/resistance : Virulence
Product : type III secretion integral inner membrane protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 155510 - 156469 bp
Length : 960 bp
Strand : +
Note : -

DNA sequence : 
ATGGTTTTTATGGAATGTTCTTTTTATAAAATCTTTCTCCCGTTTCTTGCTTTCCTGCTGCTTGTGGGTGGATCATCGGG
TTTTGCTTCGCAAGACCTTCTATTGGCGCAAACAACTCCTGCACCAACTTCAGGAGCTATTCCTAGACAACCCACTATTC
CAGCTCCTTCCGCAACACCAGCAGTGCCTCGAGCATCTTCTACTTCGAATCCTTCAACAAGGAATTTACCTAAAAAGCAA
AGCGTGACAGAACAGCTTTTGAATAATCAGGGTGGAATGGATGACATCAAGCGTCCATCGCTTATCACTCAGGCGATTGT
TTTGACTATTCTGTCGTTATTGCCTTTTATTATCATGATTTTGACCTCCTTCCTTAAAATTGTGATTGTGCTTTCCCTTT
TACGAAGTGCTCTGGGAGTTCAACAAGCGCCACCAAACCAGATTATCAATGGTGTGGCCTTTATGCTTAGCTTGTTTATT
ATGTATCCCACTGTATTAAAGATGTACGATGCAGCACAAAGTGTGATTGAATCAACGCGAGCTCCAGATTCGTTAGTTTC
AGTCGAATCTTCTAAGTACATTGTGGATGTAGCAGATGCTTCTAAGGAGCCTTTAAGAATGTTTTTAAAGCGGAATTCAA
GTGTTAAGCACCAAGCTTTGTTCTATCGGATGGCTTATCGAATTCTGCCGGAAAATTATCGAGCAACCTTGAAGCCGGAT
GATTTTATGATTGTGGTCCCAGCCTATATTACTAGCCAGCTGAAAGATGCATTTGAAATCGGGGTATTGATCTACATTCC
ATTCTTTGTGATCGACCTTGTGACCTCTAACATTTTGCTCGCCATGGGGATGATGATGCTTTCTCCCGTGACCATTTCAA
TGCCACTCAAACTTTTTCTTCTTGTCATGTTAGATGGTTGGACTTTGCTCATTGATGGATTGGTCAATACTTTCCGCTAA

Protein sequence : 
MVFMECSFYKIFLPFLAFLLLVGGSSGFASQDLLLAQTTPAPTSGAIPRQPTIPAPSATPAVPRASSTSNPSTRNLPKKQ
SVTEQLLNNQGGMDDIKRPSLITQAIVLTILSLLPFIIMILTSFLKIVIVLSLLRSALGVQQAPPNQIINGVAFMLSLFI
MYPTVLKMYDAAQSVIESTRAPDSLVSVESSKYIVDVADASKEPLRMFLKRNSSVKHQALFYRMAYRILPENYRATLKPD
DFMIVVPAYITSQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPVTISMPLKLFLLVMLDGWTLLIDGLVNTFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-40 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-40 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-39 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-39 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-39 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctR, cdsR YP_004650950.1 type III secretion integral inner membrane protein VFG2131 Protein 1e-61 46