Gene Information

Name : tetP (HMPREF0538_22260)
Accession : YP_004650777.1
Strain :
Genome accession: NC_015700
Putative virulence/resistance : Resistance
Product : tetracycline resistance protein TetP
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0480
EC number : -
Position : 2563 - 4482 bp
Length : 1920 bp
Strand : -
Note : COG: COG0480

DNA sequence : 
ATGAAAATAATCAATATTGGAATTCTTGCCCATGTAGACGCTGGAAAGACGACCTTGACGGAGAGCCTGCTATATGCCAG
CGGAGCCATTTCAGAACCGGGGAGCGTCAAAAAAGGGACAACGAGGACGGACACCATGTTTTTGGAGCGGCAGCGTGGGA
TTACCATTCAAGCGGCAGTCACTTCCTTCCAGTGGCACAGATGTAAAGTCAACATTGTGGATACGCCCGGCCACATGGAT
TTTTTGGCGGAGGTGTACCGCTCTTTGGCTGTTTTAGATGGGGCCATCTTGGTGATCTCCGCTAAAGATGGCGTGCAGGC
CCAGACCCGTATTCTGTTCCATGCCCTGCGGAAAATGAACATTCCCACCGTTATCTTTATCAACAAGATCGACCAGGCTG
GCGTTGATTTGCAGAGCGTGGTTCAGTCTGTTCGGGATAAGCTCTCCGCCGATATTATCATCAAGCAGACGGTGTCGCTG
TCCCCGGAAATAGTCCTGGAGGAAAATACCGACATAGAAGCATGGGATGCGGTCATCGAAAATAACGATAAATTATTGGA
AAAGTATATCGCAGGAGAACCAATCAGCCGGGAAAAACTTGTGCGGGAGGAACAGCGGCGGGTTCAAGACGCCTCCCTGT
TCCCGGTCTATTATGGCAGCGCCAAAAAGGGCCTTGGCATTCAACCGTTGATGGATGCGGTGACAGGGCTGTTCCAACCG
ATTGGGGAACAGGGGAGCGCCGCCCTATGCGGCAGCGTTTTCAAGGTGGAGTATACAGATTGCGGCCAGCGGCGTGTCTA
TCTACGGCTATACAGCGGAACGCTGCGCCTGCGGGATACGGTGGCCCTGGCCGGGAGAGAAAAGCTGAAAATCACAGAGA
TGCGTATTCCATCCAAAGGGGAAATTGTTCGGACAGACACCGCTTATCCGGGTGAAATTGTTATCCTTCCCAGCGACAGC
GTGAGGTTAAACGATGTATTAGGGGACCCAACCCGGCTCCCTCGTAAAAGGTGGCGTGAGGACCCCCTCCCCATGCTGCG
GACGTCGATTGCGCCGAAAACGGCAGCGCAAAGAGAACGGCTGCTGGACGCTCTTACGCAACTTGCGGATACTGACCCGC
TTTTGCGCTGCGAGGTGGATTCCATCACCCATGAGATCATTCTTTCTTTTTTGGGCCGGGTGCAGTTGGAGGTTGTTTCC
GCTTTGCTGTCGGAAAAATACAAGCTTGAAACAGTGGTAAAGGAACCCACCGTCATTTATATGGAGCGGCCGCTCAAAGC
AGCCAGCCACACCATCCATATCGAGGTGCCGCCCAACCCGTTTTGGGCATCCATCGGACTGTCTGTTACACCACTCCCGC
TTGGCTCCGGTGTACAATACGAGAGCCGGGTTTCGCTGGGATACTTGAACCAGAGTTTTCAAAACGCTGTCAGGGATGGT
ATCCGTTACGGGCTGGAGCAGGGCTTGTTCGGCTGGAACGTAACGGACTGTAAGATTTGCTTTGAATACGGGCTTTATTA
CAGTCCGGTCAGCACGCCGGCGGACTTCCGCTCATTGGCCCCGATTGTATTGGAACAGGCATTGAAGGAATCAGGGACGC
AACTGCTGGAACCTTATCTCTCCTTCACCCTCTATGCGCCCCGGGAATATCTTTCCAGGGCTTATCATGATGCACCGAAA
TACTGTGCCACCATCGAAACGGTCCAGGTAAAAAAGGATGAAGTTGTCTTTACTGGCGAGATTCCCGCCCGCTGTATACA
GGCATACCGTACTGATCTGGCCTCTTACACCAACGGGCAGAGCGTATGCCTTACAGAACTGAAAGGGTATCAGGCCGCTG
TCGGCAAGCCAGTCATCCAGCCCCGCCGTCCAAACAGCCGCCTGGACAAGGTGCGCTATATGTTTCAGAAGATAATGTAA

Protein sequence : 
MKIINIGILAHVDAGKTTLTESLLYASGAISEPGSVKKGTTRTDTMFLERQRGITIQAAVTSFQWHRCKVNIVDTPGHMD
FLAEVYRSLAVLDGAILVISAKDGVQAQTRILFHALRKMNIPTVIFINKIDQAGVDLQSVVQSVRDKLSADIIIKQTVSL
SPEIVLEENTDIEAWDAVIENNDKLLEKYIAGEPISREKLVREEQRRVQDASLFPVYYGSAKKGLGIQPLMDAVTGLFQP
IGEQGSAALCGSVFKVEYTDCGQRRVYLRLYSGTLRLRDTVALAGREKLKITEMRIPSKGEIVRTDTAYPGEIVILPSDS
VRLNDVLGDPTRLPRKRWREDPLPMLRTSIAPKTAAQRERLLDALTQLADTDPLLRCEVDSITHEIILSFLGRVQLEVVS
ALLSEKYKLETVVKEPTVIYMERPLKAASHTIHIEVPPNPFWASIGLSVTPLPLGSGVQYESRVSLGYLNQSFQNAVRDG
IRYGLEQGLFGWNVTDCKICFEYGLYYSPVSTPADFRSLAPIVLEQALKESGTQLLEPYLSFTLYAPREYLSRAYHDAPK
YCATIETVQVKKDEVVFTGEIPARCIQAYRTDLASYTNGQSVCLTELKGYQAAVGKPVIQPRRPNSRLDKVRYMFQKIM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tet(W) YP_005160006.1 tetracycline resistance protein Not tested Not named Protein 0.0 99
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) Not tested 89K Protein 0.0 69
SSU98_0928 YP_001200485.1 translation elongation factor (GTPases) Not tested 89K Protein 0.0 69
tetO AFJ97266.1 truncated tetracycline resistant protein Not tested Not named Protein 5e-133 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetP YP_004650777.1 tetracycline resistance protein TetP DQ294299.gene.p01 Protein 0.0 99
tetP YP_004650777.1 tetracycline resistance protein TetP AJ222769.gene.p01 Protein 0.0 97
tetP YP_004650777.1 tetracycline resistance protein TetP AY485126.gene.p01 Protein 0.0 96
tetP YP_004650777.1 tetracycline resistance protein TetP AJ295238.gene.p01 Protein 0.0 69
tetP YP_004650777.1 tetracycline resistance protein TetP AM180355.1.gene636.p Protein 0.0 69
tetP YP_004650777.1 tetracycline resistance protein TetP X04388.gene.p01 Protein 0.0 69
tetP YP_004650777.1 tetracycline resistance protein TetP M85225.gene.p01 Protein 0.0 69
tetP YP_004650777.1 tetracycline resistance protein TetP NC_002758.1120355.p0 Protein 0.0 68
tetP YP_004650777.1 tetracycline resistance protein TetP NC_009782.5559075.p0 Protein 0.0 68
tetP YP_004650777.1 tetracycline resistance protein TetP FN594949.1.gene24.p0 Protein 0.0 68
tetP YP_004650777.1 tetracycline resistance protein TetP L09756.gene.p01 Protein 0.0 67
tetP YP_004650777.1 tetracycline resistance protein TetP AJ514254.gene.p01 Protein 2e-112 44
tetP YP_004650777.1 tetracycline resistance protein TetP L42544.gene.p01 Protein 1e-120 44
tetP YP_004650777.1 tetracycline resistance protein TetP Z21523.gene.p01 Protein 2e-102 42