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Name : clpC (HMPREF0538_20605) Accession : YP_004649107.1 Strain : Lactobacillus reuteri SD2112 Genome accession: NC_015697 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 587123 - 589615 bp Length : 2493 bp Strand : - Note : COG: COG0542 DNA sequence : ATGGATAATATGTTCACGCCAAGTGCAAAGCATGTTCTAGCAATTGCACAAGAACAAGCAAAATACTTTAAACACCAAGC AGTAGGGACTGAACACCTTCTGCTTGCCCTCTCAATGGATAAAGATGGGATTGCTAACAAAATATTTGAACAATTTTCTA TTACGAACGATGATATTCGTGAAGAAATTGAACGCTTAATTGGCTATGGAACGATGGAAAATCTGGGAGCTTCAGATTAT CTCCCATACTCACCAAAAGCAAAGCAAGTATTATCGTTAGCAGGTAAAGAAGCCCAACAAATGCATGCATTGAAGATTGG CACTGAACACTTATTATTAGCCTTAATCGCTGATGAAAGTGTTCTATCTTCACGGATTTTATATAGTCTAGATGTTGTGC CACGACAGATGAGAAAAGTAATTTTACGGCGGTTAGGGATTGCTGATAGTCAGCAACGCAATCCTAATCGTCAATCATCT CGTCGACGGATTCAGCAAACTGGTACACCAACATTAGATAAACTAGCTCGTGATATGACAGAACTTGCTCGGAATGGTCA GCTTGATCCTGTAATTGGTCGAAATAAGGAAGTTAAACGTGTGGAACAGATTCTTAGTCGTCGTACCAAGAATAACCCAG TTTTGATTGGAGAACCGGGAGTAGGGAAGACGGCAATTGCTGAAGGACTTGCTCAGCGGATGGTTGATGGTAAGGTTCCA GCTGAATTGGCTAATAAACGTTTGATGATGCTTGATATGGGATCATTAGTTGCAGGTACCAAGTATCGAGGAGAATTTGA AGATCGTCTTAAAAAAGTAATTGATGAGATTCAAAACGACGGGCATGTGATTCTTTTTATTGATGAACTCCATACCTTAA TTGGTGCTGGTGGTGCTGAAGGTGCAATTGATGCCTCCAATATTTTGAAACCGGCCTTAGCGCGAGGCGAGTTGCAAACA ATTGGTGCTACTACGCTTGATGAATATCAGAAATATATAGAATCGGATGCAGCACTTGAACGACGCTTTGCCACTGTTCA AGTTGATGAGCCGACTACTGACCAAACTCTACAAATCCTGCGAGGACTACGACCAAAGTATGAGGAGCACCATCATGCTA AAATTACTGATGAAGCGCTAGAAGAAGCAGTTAAATTGTCAGATCGTTATATTTCGGATCGATTCTTGCCAGATAAAGCA ATTGATCTTATTGATGAATCGGCAGCTATGGTTCGAATTGATGCTGAAGATAAGAAAAATCATCAGCCTTCACTAGAAAG TCAGTTAGAAGATTTGCGAACCCAAAAAGAAGAAGCAATTGATAATCAAGACTTTGATCGTGCAGCTACTCTTCGTCAAC AGGAGTTAGCACTAAAAGATAAGATTGACCGTAAAAAACAACGCACTCAACAAAAAGATTCTCATAACTACAAATTGAAA GTAACTGGTGAAAACATTGCACAAGTTGTTGCTGAATGGACAGGAGTTCCTTTAACTCAATTGAAGAAGAGTGAAAGTGA ACGATTGGTTAACTTGGAAAAGGTTCTGCATCAACGAGTAATTGGTCAAGATGAAGCAGTTACCGTAGTCGCTAAGGCAA TTCGGCGTGCACGAAGCGGTCTTAAGGATCCTAGTCGGCCGATTGGTTCTTTTATGTTTTTAGGACCGACCGGGGTAGGA AAAACAGAGCTTGCCAAGGCATTAGCTGCTGCAATGTTTGGCTCGGAAGATAATATGATCCGGATTGATATGTCCGAATA TATGGAAAAATATAGTACTAGTCGCTTGATTGGTGCCGCTCCAGGATATGTCGGTTATGACGAGGGTGGCCAACTAACTG AAAAAGTACGGCAACATCCATATTCAGTTGTCTTATTAGATGAAGCTGAAAAGGCACATCCGGATGTATTTAATTTATTA CTTCAAGTTTTAGATGATGGTTACTTAACTGATGCAAAAGGTCGGCGCGTTGATTTTAGAAATACCATTATTATTATGAC TTCTAACCTTGGAGCAACTCAGCTTCAGGATGAAAAAGAAGTTGGTTTTGGGGCAAAAGATATGTCACAAGACTATAATG CGATGGCAGCGGCGATTAAGCAACAAATGAGGTTATACTTCCGCCCAGAATTCCTTAATCGGATTGATGAAACGATTATC TTCCATTCATTACAAAAGAAAGAGCTTCATCAAATTGTTAAACTCATGGTTAATGATTTAAATAAACGGGTAAGTGAGCA AGGCATTAACTTGAAAGTTACGCCTGCTGCAATTGATGTAATTGCAAAGCTTGGTTACAATCCTGCTTATGGAGCTCGTC CGCTTCGTCGTGCCTTACAAGATCATGTTGAAGATGATTTGAGTACTGGACTACTTAGTGGTGAAATCAATGTTGGAGAT GACGTAACAGTAGGTGCGCATCACGGTAAAATTACTTTTAAAGTAAAAAAGCCAGATGAAGATAAAGCTGTTGAATTAAA ATTGAATAGATAA Protein sequence : MDNMFTPSAKHVLAIAQEQAKYFKHQAVGTEHLLLALSMDKDGIANKIFEQFSITNDDIREEIERLIGYGTMENLGASDY LPYSPKAKQVLSLAGKEAQQMHALKIGTEHLLLALIADESVLSSRILYSLDVVPRQMRKVILRRLGIADSQQRNPNRQSS RRRIQQTGTPTLDKLARDMTELARNGQLDPVIGRNKEVKRVEQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRMVDGKVP AELANKRLMMLDMGSLVAGTKYRGEFEDRLKKVIDEIQNDGHVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQT IGATTLDEYQKYIESDAALERRFATVQVDEPTTDQTLQILRGLRPKYEEHHHAKITDEALEEAVKLSDRYISDRFLPDKA IDLIDESAAMVRIDAEDKKNHQPSLESQLEDLRTQKEEAIDNQDFDRAATLRQQELALKDKIDRKKQRTQQKDSHNYKLK VTGENIAQVVAEWTGVPLTQLKKSESERLVNLEKVLHQRVIGQDEAVTVVAKAIRRARSGLKDPSRPIGSFMFLGPTGVG KTELAKALAAAMFGSEDNMIRIDMSEYMEKYSTSRLIGAAPGYVGYDEGGQLTEKVRQHPYSVVLLDEAEKAHPDVFNLL LQVLDDGYLTDAKGRRVDFRNTIIIMTSNLGATQLQDEKEVGFGAKDMSQDYNAMAAAIKQQMRLYFRPEFLNRIDETII FHSLQKKELHQIVKLMVNDLNKRVSEQGINLKVTPAAIDVIAKLGYNPAYGARPLRRALQDHVEDDLSTGLLSGEINVGD DVTVGAHHGKITFKVKKPDEDKAVELKLNR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 49 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 8e-94 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_004649107.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 59 |
| clpC | YP_004649107.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 2e-157 | 52 |
