|
Name : HMPREF0538_20542 (HMPREF0538_20542) Accession : YP_004649044.1 Strain : Lactobacillus reuteri SD2112 Genome accession: NC_015697 Putative virulence/resistance : Unknown Product : phage integrase family site-specific recombinase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1961 EC number : - Position : 532667 - 534253 bp Length : 1587 bp Strand : + Note : COG: COG1961 DNA sequence : ATGGCGAAAGTTAGAATTATCCCCGCCCAAGTCAAACAAGGTAATCGAAACCGACAAATTGAAGAATCGGAAGCTAAGCT CAAAGTAGCTGCCTATTGCCGGGTCTCAACCCTCTACGAAGATCAAGCATCAAGTTATGAAACCCAAGTAGCCCACTATA AAGAATTCATCACCAAGAATCCCAAGTGGGAACTAGCTGGTATCTATGCTGATGATGGAATTTCTGGAACGGATACCAAG AAGCGGAATCAGTTCAACCAGATGATTGATGACGCCAAGCAAGGTAAAATTGACCTCATCGTCACCAAGTCCATCAGCCG GTTTGCCCGGAACACCATCGACTGCTTGCAATATATCCGGGAATTAAAAGAACTTCATGTTGCGGTCTTCTTTGAAAAGG AAAACATCAACACGATGGACGCCAAGGGTGAAGTCCTAATTACCATTATGGCATCACTTGCCCAACAAGAAAGTGAATCC ATTTCGCGTAATATTAAGATTGGTCTTCAGTACCGCTATCAACGTGGCCAAGTAATCGTCAATACTGCCCGCTTTCTTGG CTATGATAAAGATGATGATGGCAACCTGGTCATTAATCCTGAACAAGCCAAAGTCGTCAAGCGAATCTTCTATGAATGCC TGACGGGAAAAAGTGCGATTGAAATTGCCCGCGAGCTGACCAAAGAAGGCATCAAGAATGGTATCGGTCGGACGCAGTGG CATTCGTCTGGGATTATCAAGATTCTCCGTAACGAAAAATACATCGGTGATGCCCTTTTGCAGAAGACTTATACGGTAGA TTTCTTAACCAAGAAGCGGGTCAAAAATGACGGCCAAGTGCCACAGTACTATGTAGAGAACAACCACCCTGCTATTATCT CCCGTGCCGTCTTCTACCAAGTCCAGAAGCTCTTGGATATGCGCCGAGAGGGCTTCACAACAGAAGGTGGGCATCACCAT GGCTATACTAACGCCTATTGCTTTTCCTCGATTGTCTACTGTGGTCGCTGCAAGGACATCTACACCCGGTGCGTTTGGTA TCGACCAAGGATTGGCGAGGTCGAAAAGGTCAACGTCTGGCGCTGCTATTCCCGCCTTCACTGGAACCATAAAGGAAAAC GCTGCATGGGGCGGACAATCACTGAAGCTGATCTAGAAGAAGCCAGCTTAAAGGCCATGAACGAGTTGATCCAACAACAT CAACTTGCTGATAAGCAAATCGCCGCCAACATTCTTAAAGTCACCAAAGGCACCACCGGCCCTAGCCTGGATGAGCTTGA CCAACAATTAGAAGATCAACAGTTATTGCTCTTGAATATGAGTACCCACAATAAGAACGTCGAGCAATTAACTGAACAGG TCCAAGCCTTACGAAAACAACGTGAACAGCTTATACAACAGGAAATCGACCACGACATCAAACGCTCCAACCTGAAGAAC ATCCAGTCCTTCTTCCAAACCTATCAAGGTGGCCTCACCAAGTTTGATGAAAAACTGGTCCGCCTCTTGATAGAAAAAAT CACCATCTTCAAAAGCAAAATTGACTTTACTTTCAAGGATGGTGAAGTGATTACAGTCAAAATGTAA Protein sequence : MAKVRIIPAQVKQGNRNRQIEESEAKLKVAAYCRVSTLYEDQASSYETQVAHYKEFITKNPKWELAGIYADDGISGTDTK KRNQFNQMIDDAKQGKIDLIVTKSISRFARNTIDCLQYIRELKELHVAVFFEKENINTMDAKGEVLITIMASLAQQESES ISRNIKIGLQYRYQRGQVIVNTARFLGYDKDDDGNLVINPEQAKVVKRIFYECLTGKSAIEIARELTKEGIKNGIGRTQW HSSGIIKILRNEKYIGDALLQKTYTVDFLTKKRVKNDGQVPQYYVENNHPAIISRAVFYQVQKLLDMRREGFTTEGGHHH GYTNAYCFSSIVYCGRCKDIYTRCVWYRPRIGEVEKVNVWRCYSRLHWNHKGKRCMGRTITEADLEEASLKAMNELIQQH QLADKQIAANILKVTKGTTGPSLDELDQQLEDQQLLLLNMSTHNKNVEQLTEQVQALRKQREQLIQQEIDHDIKRSNLKN IQSFFQTYQGGLTKFDEKLVRLLIEKITIFKSKIDFTFKDGEVITVKM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smi_1713 | YP_003446815.1 | site-specific recombinase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-118 | 50 |
| SSU05_0953 | YP_001198319.1 | DNA recombinase | Not tested | 89K | Protein | 3e-115 | 48 |
| SSU98_0960 | YP_001200518.1 | DNA recombinase | Not tested | 89K | Protein | 3e-115 | 48 |
