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Name : clpE (HMPREF0538_20346) Accession : YP_004648848.1 Strain : Lactobacillus reuteri SD2112 Genome accession: NC_015697 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 341955 - 344159 bp Length : 2205 bp Strand : + Note : COG: COG0542 DNA sequence : ATGCAATGTCAATACTGTCATCAAAATCCAGCCACGATTCATCTTCAAATGAATTTTAATGGACAACGGATTCAAATAGA CCTCTGCCAAAATTGTTATCAAAAATTACAAAATCTACAAACAGATATGATGAATGGAGGTAACGGAATGAATAATTTCG GTTTTGGAAGCCTCGAAGACTTCATGAACGCAATGAACAATATGCAAAGCCAAGCTGCTGGTGCTAATGGTCAAAACATG AACGGCCAATCCCAACGACAAGGTGGCGGACGAAATGGAAAAGGAATCCTTGGTCAATATGGGATCAACCTTACTGATCT CGCTCGCCAAGGTAAAATTGACCCTGTCATCGGGCGCGACAACGAAATTAAACGAGTAATCGAAATTTTAAACCGTCGGA CCAAGAATAACCCAGTCTTGATTGGTGAAGCTGGGGTTGGTAAGACCGCGGTTGTTGAAGGCTTAGCTCAAGCAATCGTT AGTGGCCAAGTTCCCGAAAAGCTTGCTAACAAGGAAATTATCCGGCTCGATGTTGTTTCCTTAGTTCAAGGAACAGGAAT TCGGGGCCAATTTGAAAAACGAATGCAACAATTAATGGAAGAAGTTCGTAAGAATAAAAACATCATCCTCTTTATTGACG AAATCCACGAAATCATGGGTGCGGGAAATGCTGAAGGCGGAATGGACGCTGGAAATGTTCTTAAGCCTGCCCTTGCCCGT GGTGACTTCCAATTAGTTGGTGCCACTACTCTTAATGAATATCGAAAGATCGAAAAAGATGCAGCTCTTGCACGACGGTT CCAACCAGTTGAAGTTGATGAACCATCCGTTGAAGAAACAATCCGCATCTTAAACGGAATCAAAAATCGTTATCAAGATT ACCACCATGTTAAATACACAGATGACGCAATTGTAGCAGCTGCTAAACTTTCTGACCGCTACATTCAAGATCGTTACTTA CCTGACAAAGCTATCGACTTACTTGATGAAGCGGGATCAAAGAAGAACTTAACGCTTAAAAATGTGGATCCAAACGCAAT CGAAAATGAAATCCACACAGCTGAAGCACACAAGCAACAAGCAGCTGATAACCAAGACTATGAAAAAGCAGCTTTCTACC GCGATCAAGTCGCTAAACTTGAAAAGGCAAAGAAAGAAGCTGAAGAAAACCATACTGAAGATTCTGCAACTGTTACCGTT AAGGATATGCAGAGAATCGTTGAAGAACGGACAAATATTCCAGTTGGTGACCTGCAAAAGCAAGAAGAAAATCAACTTCG CGACCTTGATAAGAAGCTTGATGAACATGTTATTGGTCAAACCCAAGCAGTGGATAAGGTTGCCCGTGCCATTCGTCGTA ACCGGATCGGTTTGAACAAGTCTGGTCGGCCAATTGGTAGTTTCCTCTTTGTTGGTCCTACGGGGGTTGGTAAGACTGAA ACGGCTAAGCAACTTGCCCTCCAATTGTTTGGTTCTAAGGATGCCATGATTCGGTTTGATATGTCTGAATACATGGACAA GACCTCTACTTCTAAATTAATCGGGGCTGCTCCTGGTTATGTTGGTTACGAAGAAGCTGGTCAGTTGACTGAACAAGTAC GGCGGCACCCTTACAGCTTGATCTTACTTGATGAAGTTGAAAAGGCGCACCCAGATGTTATGCACATGTTCTTACAAATT CTTGATGATGGTCGTTTAACTGATTCTCAAGGACGCACTGTTAGCTTCAAGGATACAATCATTATCATGACATCTAATGC CGGAACTGGTGATTCAGAAGCAAGTGTTGGTTTCGGTGCTGAGTCTAATGGTAGTACCCACTCCATCATTGACAAGTTGA CAAACTACTTCAAGCCAGAATTCTTAAACCGGTTTGATGACATTGTTCAATTCAATGCCCTCTCTAAAGATGACTTGATG AAGATCGTTAACTTAATGATTGATGATGTTAATAACATGCTTGCTGATAAGAACTTGCACATCGAAGTCACTAACAATGT TGAAGAAAAATTAGTTGACATGGGCTTTGATCCAAAGATGGGTGCTCGTCCTCTTCGCCGGGTAATCCAAGAACAAATCG AAGACCGGATTGCTGATTACGTTCTTGATCACAGTGACGCTCATAAATTAGTTGCTAAACTTGATGATAATGGTGACATT GTTGTCGAAGAAACTGACGAAGTACCAACAATTGCTAAAAAATAA Protein sequence : MQCQYCHQNPATIHLQMNFNGQRIQIDLCQNCYQKLQNLQTDMMNGGNGMNNFGFGSLEDFMNAMNNMQSQAAGANGQNM NGQSQRQGGGRNGKGILGQYGINLTDLARQGKIDPVIGRDNEIKRVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQAIV SGQVPEKLANKEIIRLDVVSLVQGTGIRGQFEKRMQQLMEEVRKNKNIILFIDEIHEIMGAGNAEGGMDAGNVLKPALAR GDFQLVGATTLNEYRKIEKDAALARRFQPVEVDEPSVEETIRILNGIKNRYQDYHHVKYTDDAIVAAAKLSDRYIQDRYL PDKAIDLLDEAGSKKNLTLKNVDPNAIENEIHTAEAHKQQAADNQDYEKAAFYRDQVAKLEKAKKEAEENHTEDSATVTV KDMQRIVEERTNIPVGDLQKQEENQLRDLDKKLDEHVIGQTQAVDKVARAIRRNRIGLNKSGRPIGSFLFVGPTGVGKTE TAKQLALQLFGSKDAMIRFDMSEYMDKTSTSKLIGAAPGYVGYEEAGQLTEQVRRHPYSLILLDEVEKAHPDVMHMFLQI LDDGRLTDSQGRTVSFKDTIIIMTSNAGTGDSEASVGFGAESNGSTHSIIDKLTNYFKPEFLNRFDDIVQFNALSKDDLM KIVNLMIDDVNNMLADKNLHIEVTNNVEEKLVDMGFDPKMGARPLRRVIQEQIEDRIADYVLDHSDAHKLVAKLDDNGDI VVEETDEVPTIAKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 8e-151 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpE | YP_004648848.1 | ATP-dependent Clp protease | VFG0080 | Protein | 0.0 | 58 |
| clpE | YP_004648848.1 | ATP-dependent Clp protease | VFG0079 | Protein | 2e-157 | 53 |
