|
Name : lysS (HMPREF0538_21450) Accession : YP_004649950.1 Strain : Lactobacillus reuteri SD2112 Genome accession: NC_015697 Putative virulence/resistance : Virulence Product : lysine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1464705 - 1466231 bp Length : 1527 bp Strand : + Note : COG: COG1190 DNA sequence : GTGTCACAAGAACTAGATCAAATGCGCGTTCGGCGTGAAAAAATGGAAGAGTTAAAAGAAGCGGGGATTGAACCGTTTGG CCGTCGCTTCAAACGAGACCATCTTGCCCAAGACTTGCATGATAAGTTTGATCAATACGATAAAGAAGAATTAAACGAGA TGGGCGCCAAAGTAATTATTGCGGGTCGAATGACAAGAAAGCGGAGTAGTGGTAAGGCTGGTTTCGCTGACTTTGTTGAT CGGACTGGTAAGATTCAAGTTTACGCTCGTAAGGATATGGTCGGGGATGAGCCTTACCATGTTTTCAAGCGGTCAGATAT TGGTGACTTCCTTGGAATTGAAGGGGATGTTATCAAGACGGATACAGGTGAATTAACTGTTCGTGCACATAAAATTACCT TCTTGTCAAAAGCATTGCGTCCGCTTCCTAATAAGTGGGATGGGGTTACTGATCCTGAAACTATCTATCGTCAGCGCTAC CTTGATTTAATTTCTAACCCAGAAAGTTTCAAGCGTTTCCACCAACGGACAGCGATCATCAAGGCCGTCCGGAAGTACAT GGATGATAATGGCTTTACAGAGGTAGAAACCCCAATTTTGAACACTCAAGCTGGTGGTGCTAATGCGCGTCCATTTATCA CTCACCACAATGCACTTGATATTGATATGTACTTGCGGATTGCTACCGAATTGTACCTTAAGCGGTTAATCGTTGGTGGC TTTGAACGAGTATACGAATTGGGACGGATTTTCCGGAATGAAGGGATGGATCCTCACCATAACCCTGAATTTACTACAAT GGAAACTTATGCTGCTTACTTCGACTTCCAAGATGTTATGGATGAAACAGAGGGAATAGTTAAGGCAGCAGCTAAAGTTG TTTCAGATGATGGAAAGATTACTTACCAAGGACATGAAATCGACCTTGGAGGAAACTTTAAACGGATTACGATGGTGGAT GCCGTTAAGGAAAAGACTGGCATTGACTTCAGCGATGAATCAATGACGGACGAAGATGCTAAGAAGTTAGCCGATGAACA TAAGATTGAATATAAGCCTTACTGGACAAAGGGCCATATCTTGAATGCATTCTTTGAAGAGTTCGTTGAAGATACACTTA TTCAACCAACTTTTGTCTATGAATTCCCAGTTGAAGTTTCACCATTAGCAAAGCGGAATGCTGATAATCCTGCGATGACT GACCGTTTCGAATTGTATGTTGACGGTAGCGAATTGGCAAATGCCTTTAGTGAATTAAACGATCCAATTGACCAGAAGGA ACGTTTTGAAATGCAAGCAAAGGAAAAAGCTAACGGTAATGATGAAGCTGAACCAGTCGACTTAGATTACGTTCAAGCCC TCGAATACGGAATGCCACCTACTGGGGGACTTGGTATTGGAATCGATCGTCTTGTAATGCTCCTTACTGATGCTAAATCT ATTCGGGATGTTATTCTCTTCCCAACGATGCGTCCGGAAAAGGAAACTAAGGATAGCAAGAAGGGGAAGAAGAATAAGAA AAAGTAG Protein sequence : MSQELDQMRVRREKMEELKEAGIEPFGRRFKRDHLAQDLHDKFDQYDKEELNEMGAKVIIAGRMTRKRSSGKAGFADFVD RTGKIQVYARKDMVGDEPYHVFKRSDIGDFLGIEGDVIKTDTGELTVRAHKITFLSKALRPLPNKWDGVTDPETIYRQRY LDLISNPESFKRFHQRTAIIKAVRKYMDDNGFTEVETPILNTQAGGANARPFITHHNALDIDMYLRIATELYLKRLIVGG FERVYELGRIFRNEGMDPHHNPEFTTMETYAAYFDFQDVMDETEGIVKAAAKVVSDDGKITYQGHEIDLGGNFKRITMVD AVKEKTGIDFSDESMTDEDAKKLADEHKIEYKPYWTKGHILNAFFEEFVEDTLIQPTFVYEFPVEVSPLAKRNADNPAMT DRFELYVDGSELANAFSELNDPIDQKERFEMQAKEKANGNDEAEPVDLDYVQALEYGMPPTGGLGIGIDRLVMLLTDAKS IRDVILFPTMRPEKETKDSKKGKKNKKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 8e-114 | 47 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-84 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_004649950.1 | lysine--tRNA ligase | VFG1668 | Protein | 4e-114 | 47 |
