Gene Information

Name : vicR (HMPREF0538_21172)
Accession : YP_004649672.1
Strain : Lactobacillus reuteri SD2112
Genome accession: NC_015697
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1149974 - 1150699 bp
Length : 726 bp
Strand : +
Note : COG: COG0745

DNA sequence : 
ATGGAGGGAATCATTGATATGGCAAAGAAAATTTTAGTTGTTGATGATGAAAAACCAATTTCTGATATCATCAAATTTAA
TCTTGAAAAAGAAGGATATGAAGTTGTCGTAGCCTATGATGGCGAAGCAGCTTTAGAACAAGTAGAAGCAGAAAATCCTG
ATTTAATTATTCTTGACCTAATGCTGCCGAAGATCGATGGACTTGAAGTGGCCAAGCGGGTTCGGGCTAAGCATACCATG
CCGATTATTATGGTAACTGCTAAAGATTCGGAACTAGATAAGGTGCTGGGGCTTGAGCTTGGGGCCGATGATTATGTTAC
TAAGCCGTTCTCTAACCGCGAACTAGTAGCACGAGTAAAGGCTAATTTACGACGGCAAGCAACTCTGAAGGCACCGGCAG
AAGAAGAAAATAATACCGATATTCAAATTGGCGACCTTACGATTCATCCTGAAGCCTATACCGTAACTAAGCGAGGCGAA
AATATCAATTTAACGCATCGTGAGTTTGAACTTTTACACTATCTAGCTCAACATATTGGACAAGTTATTAACCGCGAACA
TCTTCTTCAGACTGTATGGGGTTATGACTATTTTGGGGATGTTCGGACAGTTGATGTGACCGTTCGACGGCTTCGTGAAA
AGATTGAAGATAACCCGAGTCACCCCCAATGGTTAATTACCCGGCGTGGTGTTGGCTATTACCTAGCAAATCCTGATCAG
AATTAG

Protein sequence : 
MEGIIDMAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKIDGLEVAKRVRAKHTM
PIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQATLKAPAEEENNTDIQIGDLTIHPEAYTVTKRGE
NINLTHREFELLHYLAQHIGQVINREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYLANPDQ
N

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 5e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
vicR YP_004649672.1 DNA-binding response regulator NC_012469.1.7685629. Protein 2e-70 72
vicR YP_004649672.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 5e-58 58
vicR YP_004649672.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 5e-58 58
vicR YP_004649672.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 5e-58 58
vicR YP_004649672.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 7e-58 58
vicR YP_004649672.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 5e-58 58
vicR YP_004649672.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 5e-58 58
vicR YP_004649672.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 5e-58 58
vicR YP_004649672.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 5e-58 58
vicR YP_004649672.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 5e-58 58
vicR YP_004649672.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 6e-58 58
vicR YP_004649672.1 DNA-binding response regulator HE999704.1.gene2815. Protein 1e-50 54
vicR YP_004649672.1 DNA-binding response regulator NC_012469.1.7686381. Protein 8e-44 50
vicR YP_004649672.1 DNA-binding response regulator AF155139.2.orf0.gene Protein 7e-42 48
vicR YP_004649672.1 DNA-binding response regulator AE016830.1.gene1681. Protein 8e-45 47
vicR YP_004649672.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 4e-43 47
vicR YP_004649672.1 DNA-binding response regulator AE000516.2.gene3505. Protein 8e-35 44
vicR YP_004649672.1 DNA-binding response regulator AM180355.1.gene1830. Protein 4e-40 44
vicR YP_004649672.1 DNA-binding response regulator HE999704.1.gene1528. Protein 6e-31 44
vicR YP_004649672.1 DNA-binding response regulator CP004022.1.gene3215. Protein 7e-37 43
vicR YP_004649672.1 DNA-binding response regulator DQ212986.1.gene4.p01 Protein 4e-40 43
vicR YP_004649672.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 2e-37 43
vicR YP_004649672.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 2e-37 43
vicR YP_004649672.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 2e-37 43
vicR YP_004649672.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 2e-37 43
vicR YP_004649672.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 2e-37 43
vicR YP_004649672.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 2e-37 43
vicR YP_004649672.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 2e-37 43
vicR YP_004649672.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 2e-37 43
vicR YP_004649672.1 DNA-binding response regulator CP000034.1.gene3834. Protein 2e-34 42
vicR YP_004649672.1 DNA-binding response regulator CP001138.1.gene4273. Protein 1e-34 42
vicR YP_004649672.1 DNA-binding response regulator CP001918.1.gene5135. Protein 1e-29 42
vicR YP_004649672.1 DNA-binding response regulator NC_002695.1.915041.p Protein 2e-34 42
vicR YP_004649672.1 DNA-binding response regulator AF130997.1.orf0.gene Protein 5e-38 42
vicR YP_004649672.1 DNA-binding response regulator AF162694.1.orf4.gene Protein 1e-37 42
vicR YP_004649672.1 DNA-binding response regulator AE015929.1.gene1106. Protein 1e-31 42
vicR YP_004649672.1 DNA-binding response regulator CP000647.1.gene4257. Protein 4e-34 41
vicR YP_004649672.1 DNA-binding response regulator BAC0533 Protein 4e-34 41
vicR YP_004649672.1 DNA-binding response regulator NC_005054.2598277.p0 Protein 2e-39 41
vicR YP_004649672.1 DNA-binding response regulator NC_014475.1.orf0.gen Protein 2e-39 41
vicR YP_004649672.1 DNA-binding response regulator EU250284.1.orf4.gene Protein 2e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
vicR YP_004649672.1 DNA-binding response regulator VFG1702 Protein 2e-34 41
vicR YP_004649672.1 DNA-binding response regulator VFG1386 Protein 4e-31 41
vicR YP_004649672.1 DNA-binding response regulator VFG1389 Protein 2e-29 41