Gene Information

Name : rlmH (KNP414_07933)
Accession : YP_004646288.1
Strain : Paenibacillus mucilaginosus KNP414
Genome accession: NC_015690
Putative virulence/resistance : Unknown
Product : protein RlmH
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 8627988 - 8628467 bp
Length : 480 bp
Strand : -
Note : Ribosomal RNA large subunit methyltransferase H

DNA sequence :
ATGAATATCCAGATGATTACGGTGGGCAAGCTCAAGGAAAAGTACCTCGTCGAGGGAATTGCCGAATACACGAAGCGGCT
CGGCCCTTACGCCAAAATCTCCATCGTCGAGGTGCCCGACGAGAAGACGCCCGAGACCCTCAGCGCCGCGGAAGAGGCGC
AGGTGAAGCAGCGCGAGGGGGAACGCATCCTCGCGAAGGTAAGCGAGGGCGCCTTCGTCATCGCCCTCGCGATCGACGGC
AAGCCGCTCTCGAGCGAGGATCTCGCGCGGCAGCTGCAGGACCTCGCCACGTACGGGCGCAGCTCCGTTGCGTTCATTAT
CGGCGGCTCGCTCGGCCTCGCCCCCGAGGTGCTCGCGCGCGCGGACCTCAAGCTCTCGTTCGGGCGCATGACGCTGCCCC
ACCAGCTCATGCGGCTCGTGCTGGTGGAGCAGGTGTATCGGGCGTTTCGGATTATGCGGGGGGAACCGTATCACAAATGA

Protein sequence :
MNIQMITVGKLKEKYLVEGIAEYTKRLGPYAKISIVEVPDEKTPETLSAAEEAQVKQREGERILAKVSEGAFVIALAIDG
KPLSSEDLARQLQDLATYGRSSVAFIIGGSLGLAPEVLARADLKLSFGRMTLPHQLMRLVLVEQVYRAFRIMRGEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 5e-47 61
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 5e-47 61
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 5e-47 61
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 5e-47 61
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 5e-47 61
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 5e-47 61
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 5e-47 61
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 5e-47 61
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 7e-47 61
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 5e-47 61
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 7e-47 61
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 5e-47 61
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 4e-43 60
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 1e-45 60
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 6e-45 59
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 4e-46 59
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 6e-29 59
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 4e-46 58
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-46 58