Gene Information

Name : cpsE (SMB_G3109)
Accession : YP_004637727.1
Strain : Clostridium acetobutylicum DSM 1731
Genome accession: NC_015687
Putative virulence/resistance : Virulence
Product : lipopolysaccharide synthesis sugar transferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 3225196 - 3225864 bp
Length : 669 bp
Strand : -
Note : -

DNA sequence : 
TTGCAGAATTTAGAATTAGAAGATAAAAAAGTTGTATTTATGCCAGAAGAAAGCCTTGATAAGGGTATTGGGTATTTTAT
AATAAAAAGAATTATAGATGTATTTGGATCACTTGTAGGAATAATATTCTTAAGTCCTGTTATGCTCATAGTAATTGTTG
CAATAAAGTTGGACTCAAAGGGTCCTATTATTTTTTCCCAAAAAAGAGTAGGGCAAAATGGAAGAATATTCAATATGTAT
AAATTTCGTTCTATGGTTGAAAATGCAGAGAGGCTTTTAGGCAAACTTCAGGATAAAAATGAAATGTCAGGCCCCATGTT
TAAAATGAGTGATGATCCAAGAATAACAAAAGTAGGAAGGTTTATAAGAAAAACTAGTTTAGATGAACTCCCTCAGCTCT
TTAATGTTTTAAGAGGGCATATGTCGCTTGTAGGACCGAGACCTAACTTACCTAATGAAGTAAAGGAATTTAATGAGTTT
CAGAAGAGAAAGTTTATGGTGAAGCCGGGATTAACTTGTTATTGGCAGGTTATGGGCAGAAGCTCTATAGGCTTTGAGGA
ATGGATTGAGCTTGATTTGAAATATATAAAAGAGAGAAGTACATTTGTTGATTTGAAGCTTATATTCAGAACGTTTTTTT
TACTTTTCGGAGACAAAAATGCAATGTAA

Protein sequence : 
MQNLELEDKKVVFMPEESLDKGIGYFIIKRIIDVFGSLVGIIFLSPVMLIVIVAIKLDSKGPIIFSQKRVGQNGRIFNMY
KFRSMVENAERLLGKLQDKNEMSGPMFKMSDDPRITKVGRFIRKTSLDELPQLFNVLRGHMSLVGPRPNLPNEVKEFNEF
QKRKFMVKPGLTCYWQVMGRSSIGFEEWIELDLKYIKERSTFVDLKLIFRTFFLLFGDKNAM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 3e-30 45
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 1e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cpsE YP_004637727.1 lipopolysaccharide synthesis sugar transferase VFG1369 Protein 3e-20 47
cpsE YP_004637727.1 lipopolysaccharide synthesis sugar transferase VFG1309 Protein 2e-26 41