Gene Information

Name : phoP (SMB_G1725)
Accession : YP_004636365.1
Strain : Clostridium acetobutylicum DSM 1731
Genome accession: NC_015687
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1851964 - 1852662 bp
Length : 699 bp
Strand : +
Note : -

DNA sequence : 
ATGGCAGGCGAAAAAATACTTGTTGTAGATGATGAGGAGCATATAGTCAAGCTTATAAAATTTAACCTTGAAAACAATGG
ATATAAGGTTATTACGGCAGCAGATGGTGGTGAAGCACTAGAAAAGGCAAAGGGAGAAGTGCCTCAACTGGTTCTTCTAG
ATTTAATGCTTCCAGTTATGGATGGCTACGATGTTTGTAGAGAAATACGAAGGGATCAATCCATTTCAAACATGCCTGTA
ATTATGATAACAGCAAAGGGAGAAGAATTGGACAAAATATTAGGCTTGGAGCTTGGAGCAGATGATTATATAACTAAACC
TTTTTCAGTTAGAGAATTAGTTGCAAGGGTGAAGGCAGTATTAAGAAGGACTAAGGTTGATTATATAGATAAAACTTTTA
AATTTGGTAATATTCAAATAGATTTTCAAAGGCATAATGTTACCAAAGAGGGAGAAAAGGTAGAGCTTACCCTTAAGGAA
TTTGAACTTCTTCAAGTACTTATAAAGAATAAGGGCAGAGTAATGACAAGGGATTTTTTACTTGATAAAATATGGGGATA
TGAATACATTGGAGAAACACGTACGGTAGATGTTCACGTGAGGCATTTAAGGCAAAAAATTGAAGATGATGATAAAAATC
CAAAATATATAGAAACTATAAGAGGAATAGGGTATAGATTTAACTATAGTGGTGATTAA

Protein sequence : 
MAGEKILVVDDEEHIVKLIKFNLENNGYKVITAADGGEALEKAKGEVPQLVLLDLMLPVMDGYDVCREIRRDQSISNMPV
IMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRRTKVDYIDKTFKFGNIQIDFQRHNVTKEGEKVELTLKE
FELLQVLIKNKGRVMTRDFLLDKIWGYEYIGETRTVDVHVRHLRQKIEDDDKNPKYIETIRGIGYRFNYSGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 6e-34 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP YP_004636365.1 response regulator HE999704.1.gene2815. Protein 2e-46 54
phoP YP_004636365.1 response regulator NC_002952.2859905.p0 Protein 1e-50 53
phoP YP_004636365.1 response regulator NC_002951.3237708.p0 Protein 9e-51 53
phoP YP_004636365.1 response regulator NC_002758.1121668.p0 Protein 9e-51 53
phoP YP_004636365.1 response regulator NC_009641.5332272.p0 Protein 9e-51 53
phoP YP_004636365.1 response regulator NC_013450.8614421.p0 Protein 9e-51 53
phoP YP_004636365.1 response regulator NC_007622.3794472.p0 Protein 1e-50 53
phoP YP_004636365.1 response regulator NC_007793.3914279.p0 Protein 9e-51 53
phoP YP_004636365.1 response regulator NC_003923.1003749.p0 Protein 1e-50 53
phoP YP_004636365.1 response regulator NC_002745.1124361.p0 Protein 9e-51 53
phoP YP_004636365.1 response regulator NC_009782.5559369.p0 Protein 9e-51 53
phoP YP_004636365.1 response regulator NC_012469.1.7685629. Protein 3e-43 50
phoP YP_004636365.1 response regulator NC_012469.1.7686381. Protein 4e-45 48
phoP YP_004636365.1 response regulator AE016830.1.gene1681. Protein 1e-43 47
phoP YP_004636365.1 response regulator AE000516.2.gene3505. Protein 1e-35 45
phoP YP_004636365.1 response regulator NC_007793.3914065.p0 Protein 2e-34 43
phoP YP_004636365.1 response regulator NC_002758.1121390.p0 Protein 2e-34 43
phoP YP_004636365.1 response regulator NC_010079.5776364.p0 Protein 2e-34 43
phoP YP_004636365.1 response regulator AE015929.1.gene1106. Protein 2e-30 43
phoP YP_004636365.1 response regulator NC_002952.2859858.p0 Protein 2e-34 43
phoP YP_004636365.1 response regulator NC_007622.3794948.p0 Protein 2e-34 43
phoP YP_004636365.1 response regulator NC_003923.1003417.p0 Protein 2e-34 43
phoP YP_004636365.1 response regulator NC_013450.8614146.p0 Protein 2e-34 43
phoP YP_004636365.1 response regulator NC_002951.3238224.p0 Protein 2e-34 43
phoP YP_004636365.1 response regulator AF155139.2.orf0.gene Protein 2e-35 42
phoP YP_004636365.1 response regulator FJ349556.1.orf0.gene Protein 1e-34 42
phoP YP_004636365.1 response regulator HE999704.1.gene1202. Protein 5e-29 41
phoP YP_004636365.1 response regulator NC_005054.2598277.p0 Protein 7e-34 41
phoP YP_004636365.1 response regulator NC_014475.1.orf0.gen Protein 7e-34 41
phoP YP_004636365.1 response regulator DQ212986.1.gene4.p01 Protein 5e-31 41
phoP YP_004636365.1 response regulator AM180355.1.gene1830. Protein 1e-30 41
phoP YP_004636365.1 response regulator CP004022.1.gene1676. Protein 8e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP YP_004636365.1 response regulator VFG1563 Protein 3e-34 41
phoP YP_004636365.1 response regulator VFG1702 Protein 1e-33 41