Gene Information

Name : TOPB45_1333 (TOPB45_1333)
Accession : YP_004628342.1
Strain : Thermodesulfobacterium geofontis OPB45
Genome accession: NC_015682
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1331228 - 1331926 bp
Length : 699 bp
Strand : -
Note : KEGG: dal:Dalk_1007 flagellar biosynthetic protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein

DNA sequence : 
ATGATGCTTAGTTTTTATGCAGTTATGCTTCCTACTGTTAAAATCGGTTTTGAAAATGTTCAATCTCCAGAGCAATTTTC
TACTATTTTACAGATTTTAATTCTTCTTACTCTCCTTGCTATAGCTCCGACACTTCTATTAATGCTTACATCCTTTACCA
GATTGATTGTAGTCTTCTCTATTCTTAGACATGCTATTGGAACAGCACAAACACCTCCTAATCAAGTTTTAATTTCTTTA
GCACTCTTTCTAACTTTCTTTATTATGGCTCCTACTTTTAAAGAAGCTTATGAATCCGCTTTAGTACCTTATTTAAATAA
AAAGATAGATGAAAAAGAAATGTTTAAAAGAGCATCAAAACCTTTTAAAGAATTTATGTTTAAAAATACAAGAGAAAAAG
ATTTAGCTTTATTTATAAAGTTAAGAAATGAAGAACGTCCCAGAACACCTGAAGATGTGTCTATTTTTACTCTTATTCCA
GCATTTATGATAAGTGAACTTAAAACAGCCTTTCAAATAGGCTTTTTACTCTATATACCTTTTTTAGTTATAGATATGGT
CGTATCCAGCGTTCTTATATCTATGGGAATTTTAATGTTACCTCCTATGATGATATCTCTTCCTATAAAATTACTTCTTT
TCGTCCTTGTAGATGGTTGGAATTTATTAGTTGGATCTTTAGTTAAAAGTTTTTATTAA

Protein sequence : 
MMLSFYAVMLPTVKIGFENVQSPEQFSTILQILILLTLLAIAPTLLLMLTSFTRLIVVFSILRHAIGTAQTPPNQVLISL
ALFLTFFIMAPTFKEAYESALVPYLNKKIDEKEMFKRASKPFKEFMFKNTREKDLALFIKLRNEERPRTPEDVSIFTLIP
AFMISELKTAFQIGFLLYIPFLVIDMVVSSVLISMGILMLPPMMISLPIKLLLFVLVDGWNLLVGSLVKSFY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-33 44
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-32 44
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-32 44
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-33 44
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-33 44
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-30 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 8e-33 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 8e-33 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 5e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TOPB45_1333 YP_004628342.1 flagellar biosynthetic protein FliP VFG2494 Protein 3e-51 58
TOPB45_1333 YP_004628342.1 flagellar biosynthetic protein FliP VFG1259 Protein 2e-50 57
TOPB45_1333 YP_004628342.1 flagellar biosynthetic protein FliP VFG2338 Protein 3e-49 56
TOPB45_1333 YP_004628342.1 flagellar biosynthetic protein FliP VFG2016 Protein 6e-49 56
TOPB45_1333 YP_004628342.1 flagellar biosynthetic protein FliP VFG0519 Protein 2e-33 44
TOPB45_1333 YP_004628342.1 flagellar biosynthetic protein FliP VFG0394 Protein 5e-32 42