Gene Information

Name : Thein_0183 (Thein_0183)
Accession : YP_004625032.1
Strain : Thermodesulfatator indicus DSM 15286
Genome accession: NC_015681
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 187713 - 188456 bp
Length : 744 bp
Strand : +
Note : COGs: COG1338 Flagellar biosynthesis pathway component FliP; InterPro IPR005838:IPR005837; KEGG: dal:Dalk_1007 flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; SPTR: Flagellar transport protein FliP; TIGRFAM:

DNA sequence : 
ATGAAAAGACTGACGCTTAGTTTAACAACTACAGTTTTTCTGTTGGCTCCGAAAATAGCTTCAGCTATTACTTTGCCTAC
AGTGCGCTTTGGCCTGGAACAAACCAAGGGGCCTGAACAGATGGCCACCGTGCTCCAGATCTTACTCCTTCTCACTGTTC
TTTCGGTGGCTCCGGCCCTACTTCTTATGGTTACTTCTTTTACGCGCTTGGTTATTGTCTTTTCCCTCTTACGCCACGCG
CTTGGCACACAACAAACTCCACCTAACCAGGTGCTTATTGCTCTTGCCCTTTTTCTTACTTTTTTCATTATGAAGCCCGT
CTTTAGTCAGGCCTACAATCAGGCCATTTCCCCCTACCTTGCTGGGGAAATAGGGGACCAGGAGTTTTTCAGGGACGTGG
TAAAGCCCTTTCGGGAATTTATGTTCAAAAATACCCGAAAAAAAGACCTAGCCTTGATGATAAGGCTCTCTGGGGCCCCT
AAACCTGAAAACAAAGAAGACGTGAGCACTTTGACCCTTATCCCGGCCTTTATGATTAGCGAGCTGCGCACGGCCTTTGA
AATCGGCTTTTTGCTCTACATCCCGTTTTTGATTATCGACATGGTAGTGGCAAGCGTTCTCCTTTCTATGGGTATGATGA
TGCTTCCGCCGGTGATGATTTCCTTGCCTATCAAGGTGCTTCTTTTTGTACTGGTTGACGGCTGGCATTTATTGGTGGGT
TCTTTGGTGAAAAGCTTTGGCTAG

Protein sequence : 
MKRLTLSLTTTVFLLAPKIASAITLPTVRFGLEQTKGPEQMATVLQILLLLTVLSVAPALLLMVTSFTRLVIVFSLLRHA
LGTQQTPPNQVLIALALFLTFFIMKPVFSQAYNQAISPYLAGEIGDQEFFRDVVKPFREFMFKNTRKKDLALMIRLSGAP
KPENKEDVSTLTLIPAFMISELRTAFEIGFLLYIPFLIIDMVVASVLLSMGMMMLPPVMISLPIKVLLFVLVDGWHLLVG
SLVKSFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 8e-28 44
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-26 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-26 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-26 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-30 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-27 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-28 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-26 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-26 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 6e-28 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 8e-28 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 8e-28 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-27 42
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-27 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-26 42
escR AAC31528.1 L0049 Virulence LEE Protein 8e-27 42
escR AAC38369.1 EscR Virulence LEE Protein 6e-26 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-26 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 8e-27 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-26 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-26 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-26 42
escR AAK26700.1 EscR Virulence LEE Protein 9e-27 42
escR AAL57527.1 EscR Virulence LEE Protein 9e-27 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-26 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-27 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-26 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thein_0183 YP_004625032.1 flagellar biosynthetic protein FliP VFG2338 Protein 6e-41 58
Thein_0183 YP_004625032.1 flagellar biosynthetic protein FliP VFG2494 Protein 7e-43 57
Thein_0183 YP_004625032.1 flagellar biosynthetic protein FliP VFG1259 Protein 2e-44 56
Thein_0183 YP_004625032.1 flagellar biosynthetic protein FliP VFG2016 Protein 5e-40 53
Thein_0183 YP_004625032.1 flagellar biosynthetic protein FliP VFG0394 Protein 6e-32 44
Thein_0183 YP_004625032.1 flagellar biosynthetic protein FliP VFG0519 Protein 1e-26 43
Thein_0183 YP_004625032.1 flagellar biosynthetic protein FliP VFG0188 Protein 7e-31 42
Thein_0183 YP_004625032.1 flagellar biosynthetic protein FliP VFG0715 Protein 4e-26 42
Thein_0183 YP_004625032.1 flagellar biosynthetic protein FliP VFG0827 Protein 5e-27 42