Gene Information

Name : Rta_37470 (Rta_37470)
Accession : YP_004620881.1
Strain : Ramlibacter tataouinensis TTB310
Genome accession: NC_015677
Putative virulence/resistance : Virulence
Product : response regulator OmpR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3990022 - 3990696 bp
Length : 675 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCATCCTCATCGCGGAAGACGACCAGGTCCTGGCCGACGGCCTGCTGCGCAGCCTGCGCGCCTCGGGCGCCGCCGT
GGACCATGTGGCCAGCGGCACCGAGGCCGACGCCGCGCTCATGACCAACAACGAGTTCGACCTGCTGATCCTGGACCTGG
GCCTGCCGCGCATGCACGGCCTGGAGGTGCTGCGCAAGCTGCGCGGCCGCGGCTCGTCCATGCCGGTGCTGATCCTTACG
GCCGCCGACAGCGTGGAGGAACGCGTCAAGGGCCTGGACTACGGCGCTGACGACTACATGGCCAAGCCGTTCTCGCTGCA
GGAGCTGGAGGCGCGGGTGCGGGCGCTCACCCGCCGCGGCATGGGCGGCACCAGCAGCGCCATCCGGCACGGCCCGCTGG
TGTACGACCAGGCCGGCCGGGTCGCCACCATCGACGGCAGGATGGTGGAGCTGTCGGCGCGCGAGCTGGGGCTGCTGGAG
GTGCTGCTGCAGCGCGCGGGGCGCCTGGTCAGCAAGGACCAGCTGGTCGAGCGACTGTGCGAGTGGGGCGAGGAGGTGAG
CAACAACGCCATCGAGGTCTACATCCACCGGCTGCGCAAGAAGATCGAGAAGGGCCCGATCCGCATCGCCACGGTGCGCG
GCCTGGGCTACTGCCTGGAAAAGATCCAGGCCTGA

Protein sequence : 
MRILIAEDDQVLADGLLRSLRASGAAVDHVASGTEADAALMTNNEFDLLILDLGLPRMHGLEVLRKLRGRGSSMPVLILT
AADSVEERVKGLDYGADDYMAKPFSLQELEARVRALTRRGMGGTSSAIRHGPLVYDQAGRVATIDGRMVELSARELGLLE
VLLQRAGRLVSKDQLVERLCEWGEEVSNNAIEVYIHRLRKKIEKGPIRIATVRGLGYCLEKIQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-38 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rta_37470 YP_004620881.1 response regulator OmpR BAC0083 Protein 6e-35 46
Rta_37470 YP_004620881.1 response regulator OmpR BAC0487 Protein 4e-36 46
Rta_37470 YP_004620881.1 response regulator OmpR NC_002516.2.879194.p Protein 7e-33 44
Rta_37470 YP_004620881.1 response regulator OmpR BAC0197 Protein 3e-30 42
Rta_37470 YP_004620881.1 response regulator OmpR BAC0638 Protein 2e-27 42
Rta_37470 YP_004620881.1 response regulator OmpR BAC0347 Protein 1e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rta_37470 YP_004620881.1 response regulator OmpR VFG1390 Protein 7e-34 44
Rta_37470 YP_004620881.1 response regulator OmpR VFG0473 Protein 8e-38 43