Gene Information

Name : Rta_34510 (Rta_34510)
Accession : YP_004620583.1
Strain : Ramlibacter tataouinensis TTB310
Genome accession: NC_015677
Putative virulence/resistance : Virulence
Product : response regulator NtrC
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3673117 - 3674550 bp
Length : 1434 bp
Strand : +
Note : -

DNA sequence : 
GTGGACGACGAACCCGACCTGCGCACCCTGTACGAGCTGACCCTGCTGCGCGAGGGCTACCGCGTGGACTCCGCCGGCAC
GCTGGCCGAGGCGGCCGACCTGCTGCAGGCCAAGCGCTTCGATGCCGTGATCACCGACATGCGGCTGCCCGACGGCCTGG
GACTGGAGCTGCTGCAGCGTCTGGTGGCCGAGCAGCGCCCCGAGCGCTGCGTGGTCATGACGGCCTATGGTTCGGCCGAG
AACGCGGTGGAGGCGCTCAAGGCCGGCGCCTTCGACTACCTCACCAAGCCGGTGGACCTCAAGCAGTTCCGCAGCGTGGT
GGCTTCCGCCATCCGCGAGAGCGAGGCGCTGCCCCTGCGGACGCAGGCCGCGCCCCGGCCGGCCGCGGGCGAGGCCGCGC
CCGCCGGCGCCCAGCACGCGCTGCAGCGGCTGGTGGGCGGCTCGCCAGCCATGCAGCAGGTCAAGGACCGCATCGCCAAG
GTGGCCCGCAGCATGGCGCCGGTGCTGGTGCGCGGCGAATCGGGAACCGGCAAGGAGCTGGTGGCGCGCGCCATCCACGC
CTGCAGCCACCGCGCCGAGGGGCCGTTCGTGGCGGTGAACTGCGGCGCCATCCCCGAGTCGCTGCTGGAAGCCGAGTTCT
TCGGCGCGCGCAAGGGCTCCTACACCGGCGCCACGGCCGACCGCGAGGGCTATTTCCAGGCGGCGCGGGGGGGCACCCTG
TTCCTGGACGAGATCGGCGATCTGCCGCTGGCCATGCAGTCCAAGCTGCTGCGCGCCATCCAGGAGCGCCAGGTGCGCTC
GCTGGGCTCCACCCAGGAGGACGCGGTCGACGTGCGCATCGTCAGCGCCACGCACAAGGACCTGGCGGCCGAGGTCCAGT
CGGGCCGCTTCCGGCAGGACCTGTACTACCGCCTCAACGTGATCGAGATTCTGGTGCCGCCGCTGCGCGAGCGCCGCGAG
GACCTGCCGGCGCTGTGCCAGGCCCTGCTGGCCCGCATCGCGCAGGAGACCGGCATGGCCGTGCCGGTGCTGTCCGGCGT
GGTCCTGCAGCAGCTGGCTTCCCATCCCCTGCAGGGCAACGTGCGCGAGCTGGAGAACCTGCTGCACCGTGCCGTGGCGC
TGTCCGACGGCAACGAGCTGCAGGTCGACGCCACGCCGACCCCGGCCGCGGCCGCGCAGGAACCCGCGGCAGCGACCGCG
GCTGCTGCCCCCGCGGCAGCCGTCGTCGCGGACGAGCCCATGCCGTCGGACTTGCAGGCCTACCTGGACCAGCAGGAGCG
AGAGATCCTGGTCAAGGCGCTGCACGAGAGCGGCTTCAACCGCACGGCCGCGGCCCAGCGGCTGGGCCTGAGCCTGCGGC
AGATCCGCTACCGCATCGCGCGGCTGGCGATCGCCGCGCCGGGCGACGATGCACCCGACCACCCCGCCGCCTGA

Protein sequence : 
MDDEPDLRTLYELTLLREGYRVDSAGTLAEAADLLQAKRFDAVITDMRLPDGLGLELLQRLVAEQRPERCVVMTAYGSAE
NAVEALKAGAFDYLTKPVDLKQFRSVVASAIRESEALPLRTQAAPRPAAGEAAPAGAQHALQRLVGGSPAMQQVKDRIAK
VARSMAPVLVRGESGTGKELVARAIHACSHRAEGPFVAVNCGAIPESLLEAEFFGARKGSYTGATADREGYFQAARGGTL
FLDEIGDLPLAMQSKLLRAIQERQVRSLGSTQEDAVDVRIVSATHKDLAAEVQSGRFRQDLYYRLNVIEILVPPLRERRE
DLPALCQALLARIAQETGMAVPVLSGVVLQQLASHPLQGNVRELENLLHRAVALSDGNELQVDATPTPAAAAQEPAAATA
AAAPAAAVVADEPMPSDLQAYLDQQEREILVKALHESGFNRTAAAQRLGLSLRQIRYRIARLAIAAPGDDAPDHPAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 5e-70 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 5e-70 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rta_34510 YP_004620583.1 response regulator NtrC BAC0467 Protein 1e-67 50
Rta_34510 YP_004620583.1 response regulator NtrC BAC0089 Protein 7e-66 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rta_34510 YP_004620583.1 response regulator NtrC VFG1214 Protein 1e-91 52
Rta_34510 YP_004620583.1 response regulator NtrC VFG1249 Protein 4e-54 42