Gene Information

Name : Rta_30530 (Rta_30530)
Accession : YP_004620182.1
Strain : Ramlibacter tataouinensis TTB310
Genome accession: NC_015677
Putative virulence/resistance : Virulence
Product : response regulator NtrC
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3259221 - 3260528 bp
Length : 1308 bp
Strand : +
Note : -

DNA sequence : 
GTGGACGACGAGCAGGGCATGCGCAACTTCCTGGTCAAGACCCTGGTGCCGCGCTGCCATTTCGTGATGGACGCGGGCAG
CGCGGAGGAAGCCGCGGAGCTGCTGCGCGGGCACCACGTCGACCTGGTGATCCTGGACATCTCGCTGCCGGGCAAGAGCG
GCGTGGCCTGGCTGAAGGAACTGCGCGAGCACGGCTTCTCGGGCGAGGTCATCCTGATCACCGCCTTCGCCGACCTGGAC
ACCGCCATCGAGGCGCTGCGCGCCGGCGCGTCCGACTTCATCCTCAAGCCGTTCCGCGTCCCGCAGATCCTCAACTCGGT
CAAGCACTGCTACGAGCGTTCCCGCCTCAAGCGCGAGAACTACATCCTGCGGCGCGGCCAGCCGGCCGACGTGATGCAGC
GCGGCGGCCTGGTCGGCGCGTCGCCCGTGATGGAACGGCTGTCGCAGTCCATCCGCCGCATCGCCAGCGTGCACAGCACG
GTGCTGCTGCAGGGCGAGTCGGGCACCGGCAAGGAGCTGGTGGCGCGCGCCCTGCATGGCCTGAGCAGCCGGGCGCAGGG
GCCGTTCGTGCCGGTCAACTGCGCATCCATGTCGCCCGAGCTGATCGAGAGCGAGCTGTTCGGCCATGCCAAGGGCGCCT
TCACCGGCGCGGCCAAGGCGCGCGACGGCCTGTTCTACTACGCCCAGGGCGGCACCCTGTTCCTGGACGAGGTGGCCGAG
CTGCCGCTGCCGCTGCAGGCCACGCTGCTGCGCGCGCTGGAGGACCTGAAGATCCGGCCGGTGGGCAGCCAGCAGCTGCT
GCCGGTGAACGTGCGCATCATCGCCGCCACCAACCGCTCGCTGGCGCAGGAGGTGGCAGCCGGCCGCTTCCGCAAGGACC
TGTACTACCGGCTGCAGGTGGTGGAGCTGACGCTGCCGCCGCTGCGCGAGCACAAGCAGGACATCCCGCAGCTGGTGGCG
CACTTCATGTCGCAGCTGGCGCCGGCCCTGGGCGCCGAGCCGCTGGCCATCAGCGAGGCCGAGATGGCCTTCCTGATGCA
GTACGACTGGCCGGGCAACGTGCGCGAGCTGCGCAACCTCGTCGAGCGCTCGCTGATCCTGGGCACGCTCAACGTGTCGG
CCCTGTACGCCCAGCCGGCCGCCGCGCAGCTGGCGCCGTCCGGGCAGCCGACCCCGCTGCACCTGCTGGAGAAGCAGCAC
ATCCTGGCCGTGCTGGAATCCGTGCACGGCGACAAGACCCGCGCCGCCCAGCTGCTGGGCATCTCCCGGCGCACCCTCGA
GCGCCGGGTGGCCGAATGGAGCGCGTGA

Protein sequence : 
MDDEQGMRNFLVKTLVPRCHFVMDAGSAEEAAELLRGHHVDLVILDISLPGKSGVAWLKELREHGFSGEVILITAFADLD
TAIEALRAGASDFILKPFRVPQILNSVKHCYERSRLKRENYILRRGQPADVMQRGGLVGASPVMERLSQSIRRIASVHST
VLLQGESGTGKELVARALHGLSSRAQGPFVPVNCASMSPELIESELFGHAKGAFTGAAKARDGLFYYAQGGTLFLDEVAE
LPLPLQATLLRALEDLKIRPVGSQQLLPVNVRIIAATNRSLAQEVAAGRFRKDLYYRLQVVELTLPPLREHKQDIPQLVA
HFMSQLAPALGAEPLAISEAEMAFLMQYDWPGNVRELRNLVERSLILGTLNVSALYAQPAAAQLAPSGQPTPLHLLEKQH
ILAVLESVHGDKTRAAQLLGISRRTLERRVAEWSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-65 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-65 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rta_30530 YP_004620182.1 response regulator NtrC BAC0467 Protein 5e-73 43
Rta_30530 YP_004620182.1 response regulator NtrC BAC0089 Protein 1e-68 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rta_30530 YP_004620182.1 response regulator NtrC VFG1214 Protein 1e-65 44