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Name : Rta_29720 (Rta_29720) Accession : YP_004620095.1 Strain : Ramlibacter tataouinensis TTB310 Genome accession: NC_015677 Putative virulence/resistance : Virulence Product : translocation protein in type III secretion, membrane protein Function : - COG functional category : N : Cell motility COG ID : COG1377 EC number : - Position : 3160007 - 3161083 bp Length : 1077 bp Strand : - Note : - DNA sequence : ATGTCCGACGAAAAGACCGAAGAGCCGACAGACCACAAGCTGGAACAGGCGCGCGAGAAAGGCGAGGTGGCCAAGAGCCA GGACGTGGCGGTGGCCGCCTCCATGCTGGGTGTGGTGCTGGCGCTGGTGGCGCTGGGCGATTCGATCTTCGAGCGCGTCC ATCTCGTGATGGGCTCCGCGCTCGACTTCGGTGACGGCGACCTGCCGCACTCCGAAATCTTTCGCCGCATGCAGGGGATG GCACTGCAGACGGTGCTGGCGATCCTGCCGCTGTTGGTTGTGGCGGCCGTCTTCGCCGCGCTGGGGCTGATGTCGCACGT CGGCCTGATGGTGGCCATGGAGGCGGTGGCGCCCAAGCCCGAGAAGCTCGACCCGGTGGCCGGCACCAAACGGCTGTTCT CGCTGAAGTCGCTGACGAACTTCCTGATGATGGTGTTCAAGGCGACGGTGATCGGCGTCGCGGCCTGGCAGGTAATTCTG ATGCTACTGCCGCTCATCGGCGGCGCGGCTTACCAGTCGGTCGGCGGGATCGGGACCATCGCCTGGCGGGCGCTGATGAT GCTGCTGATGATCGCGCTTGGCCTGTTCATCGTGCTCGCGCCGGTGGACTTCGCCTTGCAGAGGTTCCTCTTCATGAAGG ACCAGCGCATGTCCAAGGACGAGGTCAAGCGCGAGCACAAGGGTCAGGAGGGCGACCCGCAGCTCAAGGGCCAGCGCAAG CAGCTGATGCGCGAGAACGCCAACGGGCCGCCGCCCAGGAAGGCGGTGGAGGCGGCCAGCGCCGTGATCGTCAACCCGAC GCACTACGCCGTCGCCATCCGCTACGTGGCCGAGGAGACGGGGCTGCCCATCGTAGTCGCCAAGGGCATGGATGAGGAGG CGCTGCGCATCCGCCAGGCGGCGCAGGCGCATGGCGTGCCCGTCTTCTCCAACCCGCCGCTGGCGCGGGCGCTGCACAAG GTCGATGTGGGCGGGGTCATCCCCGCCGAGCTGTTCGAGGCGGTGGCCGCCGTGCTGCGCTGGGTCGACCGCCTGGGGCG GCGGCCGCCGGACGCTGCCGCGAAAGGAGGCTGGTGA Protein sequence : MSDEKTEEPTDHKLEQAREKGEVAKSQDVAVAASMLGVVLALVALGDSIFERVHLVMGSALDFGDGDLPHSEIFRRMQGM ALQTVLAILPLLVVAAVFAALGLMSHVGLMVAMEAVAPKPEKLDPVAGTKRLFSLKSLTNFLMMVFKATVIGVAAWQVIL MLLPLIGGAAYQSVGGIGTIAWRALMMLLMIALGLFIVLAPVDFALQRFLFMKDQRMSKDEVKREHKGQEGDPQLKGQRK QLMRENANGPPPRKAVEAASAVIVNPTHYAVAIRYVAEETGLPIVVAKGMDEEALRIRQAAQAHGVPVFSNPPLARALHK VDVGGVIPAELFEAVAAVLRWVDRLGRRPPDAAAKGGW |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | BAB07858.1 | HrcU | Virulence | Hrp PAI | Protein | 8e-56 | 45 |
| hrcU | YP_362157.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 1e-54 | 45 |
| hrcU | NP_640761.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 8e-56 | 45 |
| XC_3012 | YP_244080.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 6e-57 | 45 |
| hrcU | NP_636604.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 6e-57 | 45 |
| hrcU | AAP34345.1 | HrcU | Virulence | Hrp PAI | Protein | 1e-56 | 45 |
| hrcU | YP_198724.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 2e-55 | 45 |
