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Name : Rta_29710 (Rta_29710) Accession : YP_004620094.1 Strain : Ramlibacter tataouinensis TTB310 Genome accession: NC_015677 Putative virulence/resistance : Virulence Product : type III secretory apparatus protein PcrD, membrane protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 3157947 - 3160007 bp Length : 2061 bp Strand : - Note : - DNA sequence : ATGGGACGGGCCGCGACGCGCCGCCTGGGCAAGAAGGGCCACGGGGCGGAGATCGGCACGCTCGCCGCGATCGTGGCCAT CCTGGCCTTGATCGTGTTTCCCCTGCCCACGCTGGTGATCGACATGCTGCTAGGCGTGAACATCACGGTGAGCGTGCTGC TGTTGGTGGTGGCACTCTACATCCCCAACGCGGTGGCGCTCAGCTCGTTCCCGTCGCTGCTGCTGTTCACCACCCTGTTC CGGCTGGCGCTGAACATCGCGTCCACCAAGCTGATCCTGCTGCACGCCGACGCGGGCCACATCATCGAGGCCTTCGGCAA CCTGGTGGTGGGCGGCAACCTGGTGGTGGGGATCGTGGTGTTCCTGATCATCGCCATCGTGCAGTTCATCGTGATTGCCA AAGGATCGGAACGCGTGGCCGAGGTGGGCGCACGCTTCACCCTGGACGCGATGCCGGGCAAGCAGATGAGCATCGACGCC GACCTGCGGGCTGGCCACCTGACCGGCGAGGAGGCTCGCATCAAGCGCGCCCACCTGGCCATGGAGAGCCAGCTGCACGG CGGCATGGATGGCGCGATGAAGTTCGTCAAGGGCGACGCCATCGCCGGCCTGGTGATCACGGCGATCAACCTGCTGGCGG GCATCGTGATCGGCATCACCTACCACGGCATGCCAGCGGCCGAGGCGGCCAACGTGTTCGCCGTGCTGTCGATCGGCGAC GCCATGGTGTCGCAGATCCCGTCGTTGCTGATCTGTGTGGCCGCGGGCGTGATCATCACCCGCGTGGCCGACGACAACAA GCGGCCCAAGCCGCTGAGCACCGAGATCGCGCAGCAGATGATGGCGAACCCGAGCGCGCTGTACCTGGCCGCGGCGCTGC TGTGCGGCTTCGCGATCGTGCCCGGCTTTCCCTGGTTCGTGTTCATCGGCCTGGCCGTGCTGCTGGTGGTGGTGGCCCGC AAGCTGCAGAGCGGGCGCGTCGGCGACCCGGAGGCCAGCCCCCTCAAGGGCCTGCAGCGCGAGGGCGCCAGGGGCGAGGC GCCGGGCGGCATCGAGGACAAGCCGACCGCCTTCAGCTCCCCGCTGGCGGTGACCTTGTCGGCGCAGCTGGCCAGGTCGC TCAACGCCGAGCTGCTGGGGGCGGCCTTCGAGAAGGAGCGCAGCTCGCTGCAGGAGCGGCTGGGCTTGCCGTTTCCCGGC ATCCGGCTCTGGCAGCAGGCCACGCTGGACGAGAACGCCTACGAGATCCTGGTGCACGACGTGCCGGCGAGCGCGGGCGT GCTGCAGCCGGGGCGGCAACAGGTGCTGCAGCCGCCGCCCGAGCTGCAGCCGCGCTGCGAGGCGGGCGGGCCCGCCGGTG GCGAGGCCAAGAGCTGGTGGGCCGACTCGGCGGGCCTGGGCCCCGCCGAGGGGTTGGCCATGCTGTCCCACGAGCAGGCG GTGGCCCGCCACGCGGTGATGGTGCTGCACGACCTGGCGCACCTGTTCCTCGGCATCCAGGAGGTGCAGTGGGTGCTGGA GCGCGTGGGCCAGGACTACCCGGGCCTGGTGGCCGAGGCGCAGAAGGTGGTGCCGCTACAGCGCATCTCGGAGGTGCTGC GGCGGCTGCTGGAGGAGCAGCTGCCGATCCGCAACATGCGCGCCATCTGCGAGAGCCTGATCCTCTGGGGGCCGAAGGAG AAGGACATCCTCATGCTGACCGAGTATGTGCGTGGCGACCTCGGCCGCTACCTCACGCACCGCGCCACCGGCGGCACCGG CGCCCTGGCCGCGGTGCTGCTCGACCCCTCGGTCGAGAAGATGATCCGCGAGGCCATCAAGCCCACACCGGCGGGCAACT ACCTCGCGCTGCCGCCAGACACCATGGTGGCCATCGCCCAGGACATCCGCCACCTGGCCGGCGAACGGCCACGGGCGGGC CTGGCGGTGGTCACGTCCATGGACATCCGGCGCTACGTGCGCCGCATCGTGGAGGTCGACATGAAGTGGCTGTCGGTGTA TTCGTTCCAGGAGCTGGGGCCGCAGGTGAAGCTCGAGCCGATCGGACGCGTGTCGCTGTGA Protein sequence : MGRAATRRLGKKGHGAEIGTLAAIVAILALIVFPLPTLVIDMLLGVNITVSVLLLVVALYIPNAVALSSFPSLLLFTTLF RLALNIASTKLILLHADAGHIIEAFGNLVVGGNLVVGIVVFLIIAIVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDA DLRAGHLTGEEARIKRAHLAMESQLHGGMDGAMKFVKGDAIAGLVITAINLLAGIVIGITYHGMPAAEAANVFAVLSIGD AMVSQIPSLLICVAAGVIITRVADDNKRPKPLSTEIAQQMMANPSALYLAAALLCGFAIVPGFPWFVFIGLAVLLVVVAR KLQSGRVGDPEASPLKGLQREGARGEAPGGIEDKPTAFSSPLAVTLSAQLARSLNAELLGAAFEKERSSLQERLGLPFPG IRLWQQATLDENAYEILVHDVPASAGVLQPGRQQVLQPPPELQPRCEAGGPAGGEAKSWWADSAGLGPAEGLAMLSHEQA VARHAVMVLHDLAHLFLGIQEVQWVLERVGQDYPGLVAEAQKVVPLQRISEVLRRLLEEQLPIRNMRAICESLILWGPKE KDILMLTEYVRGDLGRYLTHRATGGTGALAAVLLDPSVEKMIREAIKPTPAGNYLALPPDTMVAIAQDIRHLAGERPRAG LAVVTSMDIRRYVRRIVEVDMKWLSVYSFQELGPQVKLEPIGRVSL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 5e-146 | 59 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 5e-146 | 59 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 2e-145 | 59 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 8e-146 | 59 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 2e-144 | 58 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 2e-143 | 58 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 3e-143 | 58 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 1e-102 | 44 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 2e-78 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rta_29710 | YP_004620094.1 | type III secretory apparatus protein PcrD, membrane protein | VFG0064 | Protein | 3e-108 | 46 |
| Rta_29710 | YP_004620094.1 | type III secretory apparatus protein PcrD, membrane protein | VFG0198 | Protein | 1e-97 | 45 |
| Rta_29710 | YP_004620094.1 | type III secretory apparatus protein PcrD, membrane protein | VFG0384 | Protein | 1e-100 | 43 |
