Gene Information

Name : Rta_29680 (Rta_29680)
Accession : YP_004620091.1
Strain : Ramlibacter tataouinensis TTB310
Genome accession: NC_015677
Putative virulence/resistance : Virulence
Product : translocation protein in type III secretion, membrane protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 3155609 - 3156268 bp
Length : 660 bp
Strand : -
Note : -

DNA sequence : 
ATGCACACCGACACGTCGATTGAAGTCGTCCCGCTGCTGGCGATCATCTTCGCGATCGGCTTTCTGCCGTTCGTCGCGAT
GATGGTCACCTCGTACACCAAGATCGTCGTTGTGCTCGGCCTGGTGCGCAACGCGCTGGGCGTCCAGCAGGTGCCGCCGA
ACATGATGCTCAACGGCATCGCGATCATCATCTCGGTGTATATCGTCGCGCCGCTATTCATGGACTCGTTCGAGGCGCTT
AACAAGCCCGCGGTCGCCGAGGGCGGCGGCGCGCGGCAGGTCGCGTCGGTGGTGGAGGCGGCGCGCGAGCCGGTGCGCCG
CTTCCTGGACAAGCATGCGCACGCGCGGGAGAAGGCGTTTTTCCTGAAGTCGGTGTCCGCCATCTGGACCCCCGAGCGGG
CCAAAACCGTCAGGCCCGACGACCTCATCATCCTGGCCCCGGCGTTCACGCTGTCGGAGCTCACGGAAGCGTTCAAGATC
GGGTTCCTGATCTATCTCGCCTTCGTCGTGGTGGACCTGGTCGTGGCCAACGTGCTGCTGGCGCTCGGCTTGTCGCAGGT
GACGCCCACGCAGATCGCGATCCCCTTCAAGCTGCTGCTGTTCGTGGTGATGGACGGATGGTCCGTGCTGCTGCACGGCC
TGGTCATGACGTACCGATAA

Protein sequence : 
MHTDTSIEVVPLLAIIFAIGFLPFVAMMVTSYTKIVVVLGLVRNALGVQQVPPNMMLNGIAIIISVYIVAPLFMDSFEAL
NKPAVAEGGGARQVASVVEAAREPVRRFLDKHAHAREKAFFLKSVSAIWTPERAKTVRPDDLIILAPAFTLSELTEAFKI
GFLIYLAFVVVDLVVANVLLALGLSQVTPTQIAIPFKLLLFVVMDGWSVLLHGLVMTYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-54 63
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-54 63
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-56 61
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 9e-56 61
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 9e-56 61
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-56 61
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-56 61
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 6e-56 61
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-35 48
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 8e-32 45
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-26 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-26 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-26 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 8e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rta_29680 YP_004620091.1 translocation protein in type III secretion, membrane protein VFG0188 Protein 9e-39 49
Rta_29680 YP_004620091.1 translocation protein in type III secretion, membrane protein VFG0394 Protein 8e-34 48
Rta_29680 YP_004620091.1 translocation protein in type III secretion, membrane protein VFG0044 Protein 3e-36 46