Gene Information

Name : pilD (Rta_29160)
Accession : YP_004620038.1
Strain : Ramlibacter tataouinensis TTB310
Genome accession: NC_015677
Putative virulence/resistance : Virulence
Product : type 4 prepilin s leader peptide processing enzyme
Function : -
COG functional category : N : Cell motility
COG ID : COG1989
EC number : -
Position : 3105299 - 3106141 bp
Length : 843 bp
Strand : +
Note : -

DNA sequence : 
ATGCTGGTGTCCCCGGGCATCGATGCCGGGCTCGCGGCTCTGCTGGGCCTGCTCGTCGGCAGCTTCCTCAACGTGGTGAT
CCACCGGCTGCCCAGGATAATGGAACGCCAGTGGGCGGCCGAATGCGCCGAGCTCAACGGCCAGCCGGTGTCCGCCACCG
AGCCTTTGGATCTCATGCGTCCGCGCTCGCGTTGTCCCCACTGCGGCCATGCGATCCGCTGGTGGGAGAACATCCCGGTC
CTGAGCTGGCTGGCGCTGCGCGGCAAATGCTCGGCCTGCCGGGCGCCCATCAGCCTGCGCTACCCCTTGGTGGAACTCGC
GACCGCGGCGCTGTTCGGCTATGCCGTGTGGCGCTGGGGCGCGACGGCCAGCGGCCTGGCCTGGAGCGGCTTCGCCGCCG
CCTTGCTCGCGCTGGCGCTGATCGACTGGGACACCACCTTGCTGCCCGACGACCTCACCTTGCCGCTGCTGTGGGCCGGA
CTGATTGCCGCGGCACTGCGCTGGAGCGGCGTGCCGCTCATCGACGCGCTGTGGGGCGCGGTAGGCGGCTACCTGTCGTT
GTGGCTGGTGTACCAGGGCTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCTTCGGCGATTTCAAGCTGTTCGCCGCGT
TGGGCGCCTGGTTCGGCTGGCAGGCGCTGGTGCCCATGATCCTGATGGCCTCGGTCATCGGCGCTGTGGTGGGCATCGCG
CTCAAGCTCTCCAGCGGACTGCGCGAAGGCGGCTACGTGCCTTTCGGCCCGTTCCTGGCAGGCGCCGGCCTCACGGCCAT
GGTGTTCGGCCCGGCCGCCATCCTGCAGGCCATCGGCCTGTGA

Protein sequence : 
MLVSPGIDAGLAALLGLLVGSFLNVVIHRLPRIMERQWAAECAELNGQPVSATEPLDLMRPRSRCPHCGHAIRWWENIPV
LSWLALRGKCSACRAPISLRYPLVELATAALFGYAVWRWGATASGLAWSGFAAALLALALIDWDTTLLPDDLTLPLLWAG
LIAAALRWSGVPLIDALWGAVGGYLSLWLVYQGFKLLTGKEGMGFGDFKLFAALGAWFGWQALVPMILMASVIGAVVGIA
LKLSSGLREGGYVPFGPFLAGAGLTAMVFGPAAILQAIGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAE85237.1 putative prepilin peptidase A Not tested PAI V 536 Protein 8e-18 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilD YP_004620038.1 type 4 prepilin s leader peptide processing enzyme VFG2428 Protein 2e-31 52
pilD YP_004620038.1 type 4 prepilin s leader peptide processing enzyme VFG0234 Protein 2e-34 49
pilD YP_004620038.1 type 4 prepilin s leader peptide processing enzyme VFG1882 Protein 1e-37 47