Gene Information

Name : Rta_19170 (Rta_19170)
Accession : YP_004619027.1
Strain : Ramlibacter tataouinensis TTB310
Genome accession: NC_015677
Putative virulence/resistance : Resistance
Product : putative ABC transporter involved in lysophospholipase L1 biosynthesis, ATP-binding component
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 2019729 - 2020400 bp
Length : 672 bp
Strand : +
Note : -

DNA sequence : 
ATGTCCGAACCCATCATTTCCGTCGAGCACGTCTTCAAGTCCGTCACGGACTCGACCGGCACCCTCGACATTCTGCGCGA
TATCGATTTCACCCTGGCTCCCAGGGAGACCGTGGCCATCGTGGGCGCCTCGGGCTCGGGCAAGAGCACCTTGCTGTCCA
TCGTCGCCGGGCTGGACACGCCCACCCGCGGCACCGTGCGGCTGGCGGGGCAGGACCTGTTCGCCATCGGCGAGGACGAG
CGGGCGCGGCTGCGCGCGCAGAAGGTGGGCTTCGTGTTCCAGAGCTTCCAGCTGATGGGCAATCTCACGGCACTGGAGAA
CGTGATGCTGCCGCTGGAGCTGGTGGGCCGGCGCGATGCGCGCAAGGCCGCCGCCGAGATGCTGGCGCGCGTGGGCCTGG
ACCAGCGGCTGGGCCACTACCCCAAGGTGCTGTCCGGCGGCGAGCAGCAGCGGGTGGCGCTGGCCCGCGCGTTCGTGGTG
CAGCCGGCGGTGCTGCTGGCCGACGAGCCCACCGGCAGCCTGGACTTCGCCACCGGCGAGACCGTGATGCAGCTGATGTT
CGACCTCAACCGCGAGCAGGGCACCACGCTCGTGCTGGTGACGCACGACCGCGCCATCGCGGCCCGCTGCGATCGGCGCA
TCACCATCGAGGCGGGACGGATCGCGGGGTGA

Protein sequence : 
MSEPIISVEHVFKSVTDSTGTLDILRDIDFTLAPRETVAIVGASGSGKSTLLSIVAGLDTPTRGTVRLAGQDLFAIGEDE
RARLRAQKVGFVFQSFQLMGNLTALENVMLPLELVGRRDARKAAAEMLARVGLDQRLGHYPKVLSGGEQQRVALARAFVV
QPAVLLADEPTGSLDFATGETVMQLMFDLNREQGTTLVLVTHDRAIAARCDRRITIEAGRIAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-32 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-32 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-32 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-32 44
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-25 43
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 4e-16 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rta_19170 YP_004619027.1 putative ABC transporter involved in lysophospholipase L1 biosynthesis, ATP-binding component NC_008702.1.4606598. Protein 6e-31 49
Rta_19170 YP_004619027.1 putative ABC transporter involved in lysophospholipase L1 biosynthesis, ATP-binding component NC_012469.1.7686878. Protein 1e-39 48
Rta_19170 YP_004619027.1 putative ABC transporter involved in lysophospholipase L1 biosynthesis, ATP-binding component CP001581.1.gene598.p Protein 2e-29 42
Rta_19170 YP_004619027.1 putative ABC transporter involved in lysophospholipase L1 biosynthesis, ATP-binding component NC_012469.1.7685735. Protein 3e-36 41