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Name : gspE (Rta_12600) Accession : YP_004618368.1 Strain : Ramlibacter tataouinensis TTB310 Genome accession: NC_015677 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1304399 - 1305841 bp Length : 1443 bp Strand : - Note : - DNA sequence : ATGAATGAGAAGGGCCAGTCGCTGGTTTTCGTGACGCACGACCCTCTGGCCTTTGATCTGCAGCTCTGGTTTGAATCGAC CATAGAGGCCATTGCGCCCCGACTGCTCGAGAGAGTGCTGGTGACCAAGCAGGACTTCGAAGAATGCCTGCGCTCAGCCG AGCAAAGCGTGCGCGCTATGGATTCACTGGAGGTCGAGACGGACAGGGGCGCTGCGGAAGTCTCGGCGGTGCTCAGTCTG TCGTTGGCCACCATCGAGGCGACCGCCCACCCCACGGTACGCTTGGTCGACTCCACCCTGTATGACGCGCTGAAGCTTGG GGCATCGGACATCCACTTCGAGGTGCAGGGCAAGACCCTGACTATCAAGTACCGGATCGATGGCGTACTGCAAGCCATGA AGCGCATCGACAGCCTCGAAGCGGCTCACCAGACGGTCTCCCGCATCAAGGTGCTGTCCGACCTGGACATTTCGGAGAGA CGCATCCCCCAAGACGGCCGGTTCAGGGTCACTTTGGACCAGCGTGAGATCGACTTTCGGGTATCGATCATGCCCAATGC CGCCGGCGAGGATGCCGTCCTGCGGATCCTGGATCGCAAGCACCTCACCGGCCAATTCCAATCCCTCACACTGGACAGCT TGAGCCTGGAAGAAGAGGTCAAACGCTTCATCCGGCACTCGTCCTCGCTGCCGTATGGGCTGCTGTTGGTCACGGGGCCG ACGGGGAGCGGCAAGACCACCACCCTCTATGCAGCCCTTTCCGAAATCAACACGGGATTGGACAAGATCGTGACGATCGA GGATCCCATCGAGTACCAGCTGGCCGGCGTGCTCCAGATCCCAGTCAATGAGAAAAAAGGGCTGACTTTTGCGAAAGGCC TGAGGTCAGTCCTGCGCCACGACCCCGACAAGATCATGGTGGGGGAAATCCGGGACAGCGAAACGGCCCAGATTGCCGTG CAAGCGGCGCTGACGGGCCACCAGGTGTTCACCACGGTGCATGCCAACAATGTGTTCGACGTACTCGGCCGGTTCTCGAA CATGGGCGTCGATAGCTACAGCCTGGTAGCCGCCTTGACGGGGATCATGGCCCAGCGCCTCGTCCGCTTGGTCTGTCCGC ACTGTGCCCAGGAGGAACAAGCCAGTCCAAGCCTGGGGAGCGAGCTGGGAGTCACGGCACAGACAGAAGGCATCAAGCTC AAACAAGCCGTAGGTTGCGAGCACTGCCGCGGAACGGGCTACAAGGGACGAGCCGTGATCGCGGAAACGCTCCCGGTGGA CGATGAGATCAAGGACCTGCTCGTGAAGCAGTCACCCGTGTCCACGGTGAAGCGTGCGGCGCGCGACCGCGGCTTTCGCA GCCTACGCGATTCCGCGGTGGCACTGGTCCTCCGAGGCGGCACCACCCTGGAAGAGATCAACAGAGTCACTCCCGTTCAG TGA Protein sequence : MNEKGQSLVFVTHDPLAFDLQLWFESTIEAIAPRLLERVLVTKQDFEECLRSAEQSVRAMDSLEVETDRGAAEVSAVLSL SLATIEATAHPTVRLVDSTLYDALKLGASDIHFEVQGKTLTIKYRIDGVLQAMKRIDSLEAAHQTVSRIKVLSDLDISER RIPQDGRFRVTLDQREIDFRVSIMPNAAGEDAVLRILDRKHLTGQFQSLTLDSLSLEEEVKRFIRHSSSLPYGLLLVTGP TGSGKTTTLYAALSEINTGLDKIVTIEDPIEYQLAGVLQIPVNEKKGLTFAKGLRSVLRHDPDKIMVGEIRDSETAQIAV QAALTGHQVFTTVHANNVFDVLGRFSNMGVDSYSLVAALTGIMAQRLVRLVCPHCAQEEQASPSLGSELGVTAQTEGIKL KQAVGCEHCRGTGYKGRAVIAETLPVDDEIKDLLVKQSPVSTVKRAARDRGFRSLRDSAVALVLRGGTTLEEINRVTPVQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-76 | 45 |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-75 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | YP_004618368.1 | general secretion pathway protein E | VFG2048 | Protein | 9e-78 | 45 |
| gspE | YP_004618368.1 | general secretion pathway protein E | VFG0182 | Protein | 3e-74 | 44 |
| gspE | YP_004618368.1 | general secretion pathway protein E | VFG0233 | Protein | 2e-69 | 44 |
| gspE | YP_004618368.1 | general secretion pathway protein E | VFG2426 | Protein | 3e-61 | 43 |
| gspE | YP_004618368.1 | general secretion pathway protein E | VFG1876 | Protein | 2e-70 | 43 |
| gspE | YP_004618368.1 | general secretion pathway protein E | VFG0112 | Protein | 5e-66 | 42 |
