Gene Information

Name : Mesop_5508 (Mesop_5508)
Accession : YP_004614015.1
Strain : Mesorhizobium opportunistum WSM2075
Genome accession: NC_015675
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator AlpA
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 5632009 - 5632224 bp
Length : 216 bp
Strand : -
Note : COGs: COG3311 transcriptional regulator protein; InterPro IPR010260; KEGG: rpc:RPC_4521 phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; SPTR: Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory protein (AlpA)

DNA sequence : 
ATGCCCGAGCCGGATCGTATCATACGCCTCAAAACCGTCCTTGCCCGGACCGGGCTGTCCCGTTCAACCATCTATCGCAA
GATCGCCGAAGGCACGTTCCCAGCCCAGATCAAGATCAGCATCAAAGGTGCGGGCTGGCGGGAATCCGATGTCAGTCGGT
GGATTGCTGATCCCGTTGCATGGCACACCGGCGCATCACGAAAAAACAGCGAGTAG

Protein sequence : 
MPEPDRIIRLKTVLARTGLSRSTIYRKIAEGTFPAQIKISIKGAGWRESDVSRWIADPVAWHTGASRKNSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 3e-10 45
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 3e-10 45
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 6e-10 43
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 9e-10 41
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 9e-10 41
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 7e-10 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mesop_5508 YP_004614015.1 phage transcriptional regulator AlpA VFG1141 Protein 8e-11 45
Mesop_5508 YP_004614015.1 phage transcriptional regulator AlpA VFG1118 Protein 3e-10 41