Gene Information

Name : Mesop_5380 (Mesop_5380)
Accession : YP_004613890.1
Strain : Mesorhizobium opportunistum WSM2075
Genome accession: NC_015675
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5490549 - 5491214 bp
Length : 666 bp
Strand : -
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR005829:IPR001789:IPR001867; KEGG: mlo:mlr7684 two-component system, regulatory protein; PFAM: response regulator receiver; trans

DNA sequence :
ATGCGCGTACTCGTCGTCGAGGATGACAAGGATCTCAACCGCCAGATAGCCGACGCGCTGGTCGATGCCGGCTATGTCGT
CGACCGTGCCTTCGACGGCGAGGAAGGCCATTTCCTCGGCGACACCGAGCCTTACGACGCCGTCGTGCTCGACATCGGCC
TGCCGCAGATGGACGGCATCAGCGTGGTCGAGCGCTGGCGCCGCGGCGGCCGCAAGATGCCGGTGCTGATCCTGACGGCG
CGCGACCGCTGGAGCGACAAGGTTTCCGGCATCGATGCCGGCGCCGACGACTATGTCACCAAGCCGTTCCATATCGAGGA
AGTGCTTGCCAGGGTCAGGGCGCTTATCCGCCGGGCCGCCGGCCACGCTTCGTCCGAACTCACCTGCGGGCCGCTGCGTC
TCGACACCAAGGCGTCGAAGGCCGATGTCGACGGTGTGCCACTGAAGCTGACCTCGCACGAATTCCGCCTGCTCGCCTAC
CTGATGCACCACATGGGCGATGTGGTCTCGCGAACCGAACTGGTCGAGCATCTCTACGACCAGGATTTCGACCGCGATTC
CAACACCATCGAGGTCTTTGTCGGGCGGCTGCGCAAGAAGATGGGCATCGACATGATCGAAACCGTGCGCGGCATGGGCT
ACCGCATGCGTGAGCCGGAGGCGTAA

Protein sequence :
MRVLVVEDDKDLNRQIADALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQMDGISVVERWRRGGRKMPVLILTA
RDRWSDKVSGIDAGADDYVTKPFHIEEVLARVRALIRRAAGHASSELTCGPLRLDTKASKADVDGVPLKLTSHEFRLLAY
LMHHMGDVVSRTELVEHLYDQDFDRDSNTIEVFVGRLRKKMGIDMIETVRGMGYRMREPEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mesop_5380 YP_004613890.1 winged helix family two component transcriptional regulator CP000647.1.gene1136. Protein 1e-34 47
Mesop_5380 YP_004613890.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 5e-38 47
Mesop_5380 YP_004613890.1 winged helix family two component transcriptional regulator BAC0530 Protein 1e-34 47
Mesop_5380 YP_004613890.1 winged helix family two component transcriptional regulator CP004022.1.gene1005. Protein 1e-37 46
Mesop_5380 YP_004613890.1 winged helix family two component transcriptional regulator CP001138.1.gene1939. Protein 2e-34 46
Mesop_5380 YP_004613890.1 winged helix family two component transcriptional regulator NC_002695.1.913289.p Protein 1e-33 45
Mesop_5380 YP_004613890.1 winged helix family two component transcriptional regulator CP001918.1.gene2526. Protein 3e-33 45
Mesop_5380 YP_004613890.1 winged helix family two component transcriptional regulator CP000034.1.gene2022. Protein 4e-34 45
Mesop_5380 YP_004613890.1 winged helix family two component transcriptional regulator BAC0487 Protein 4e-28 43
Mesop_5380 YP_004613890.1 winged helix family two component transcriptional regulator BAC0197 Protein 9e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mesop_5380 YP_004613890.1 winged helix family two component transcriptional regulator VFG0475 Protein 2e-34 46
Mesop_5380 YP_004613890.1 winged helix family two component transcriptional regulator VFG0473 Protein 1e-26 42
Mesop_5380 YP_004613890.1 winged helix family two component transcriptional regulator VFG1389 Protein 2e-26 42