Gene Information

Name : HBZC1_14080 (HBZC1_14080)
Accession : YP_004608106.1
Strain : Helicobacter bizzozeronii CIII-1
Genome accession: NC_015674
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1305722 - 1306486 bp
Length : 765 bp
Strand : -
Note : -

DNA sequence : 
GTGTTTAGGCTGATTTTCTGTTGGGCTGTGTTGGCGTTCTCTTTATTGTTTGGAGCTGACCCAGCCCTTCCAAAAGATCC
CATTATCCCCACGATCAACCTCTCTTTGAGCGCGCCCCACACCCCAGATCAGTTAGTAACGACTTTAAATGTTGTGTTGG
TGCTCACCCTCTTGGTGCTCGCCCCCTCCTTGATCTTGGTGATGACCAGTTTTATCCGTATTTTGGTGGTGTTTTCTTTC
TTGCGCACAGCACTAGGCACGCAACAAACCCCCCCCACGCAAATTTTGGTCTCTCTAGCCTTGATTTTGACCTTTTTTAT
CATGGAGCCAGCCGCCAAGAAAAGCTATGAAGTGGCGATCAAGCCTTATTTAGCCGAAAAAATTTCCTATAGCGAAGCTT
TTGAGCGGGGCATTGTGCCCTTTAAAGAGTTCATGCTCAAAAACACCCGTGAAAAGGATTTAGCCCTCTTTTTTAGAATC
CGCCACTTAGAAAACCCCAAAACCCCCAGTGCCGTTCCCTTAAGCGTGCTCGTGCCTGCCTTTATGATTAGTGAGCTTAA
AACGGCGTTCCAGATTGGCTTTTTGCTCTATCTGCCTTTTTTGGTGATTGACATGGTGGTTAGCTCCATTTTAATGGCGA
TGGGGATGATGATGTTGCCCCCGGTCATGATCTCCTTGCCCTTTAAAATCTTGGTGTTTATCTTGGTTGATGGGTTTAAT
TTGCTAGTAGAAAATTTGGTCGCTAGCTTTAAACATATCTCTTAG

Protein sequence : 
MFRLIFCWAVLAFSLLFGADPALPKDPIIPTINLSLSAPHTPDQLVTTLNVVLVLTLLVLAPSLILVMTSFIRILVVFSF
LRTALGTQQTPPTQILVSLALILTFFIMEPAAKKSYEVAIKPYLAEKISYSEAFERGIVPFKEFMLKNTREKDLALFFRI
RHLENPKTPSAVPLSVLVPAFMISELKTAFQIGFLLYLPFLVIDMVVSSILMAMGMMMLPPVMISLPFKILVFILVDGFN
LLVENLVASFKHIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escR AAK26700.1 EscR Virulence LEE Protein 2e-21 44
escR AAL57527.1 EscR Virulence LEE Protein 2e-21 44
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-21 44
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-21 44
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-21 44
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-21 44
escR AAC31528.1 L0049 Virulence LEE Protein 2e-21 44
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-21 44
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-21 44
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-21 44
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-21 44
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-24 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-24 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-25 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-25 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-25 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 8e-24 43
escR AAC38369.1 EscR Virulence LEE Protein 8e-21 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-24 42
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-21 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-17 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HBZC1_14080 YP_004608106.1 flagellar biosynthesis protein FliP VFG1259 Protein 4e-41 57
HBZC1_14080 YP_004608106.1 flagellar biosynthesis protein FliP VFG2016 Protein 9e-40 56
HBZC1_14080 YP_004608106.1 flagellar biosynthesis protein FliP VFG2494 Protein 1e-42 56
HBZC1_14080 YP_004608106.1 flagellar biosynthesis protein FliP VFG2338 Protein 1e-39 55
HBZC1_14080 YP_004608106.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-26 44
HBZC1_14080 YP_004608106.1 flagellar biosynthesis protein FliP VFG0827 Protein 9e-22 44
HBZC1_14080 YP_004608106.1 flagellar biosynthesis protein FliP VFG0519 Protein 2e-25 43
HBZC1_14080 YP_004608106.1 flagellar biosynthesis protein FliP VFG0394 Protein 2e-24 43
HBZC1_14080 YP_004608106.1 flagellar biosynthesis protein FliP VFG0715 Protein 4e-21 43
HBZC1_14080 YP_004608106.1 flagellar biosynthesis protein FliP VFG0188 Protein 3e-26 42