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Name : Flexsi_0888 (Flexsi_0888) Accession : YP_004603118.1 Strain : Flexistipes sinusarabici DSM 4947 Genome accession: NC_015672 Putative virulence/resistance : Virulence Product : Lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 942079 - 943551 bp Length : 1473 bp Strand : - Note : PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; COGs: COG0622 phosphoesterase; InterPro IPR004843:IPR000979; KEGG: cni:Calni_0361 phosphodiesterase DNA sequence : ATGGATGAACACAGATACAAAAAACTGCAGCATTTAAAAGATTCTGATATTTTACCGTACGTAAATTCATTTAAAGTCCC TTTTTCACTTGCAGAAATCAAGGAAAAGTATGAAGGAGTACAAAAATCTCAACTGATGGAAAACAAATACAGATTTACAG TGGCCGGCAGAGTGATGTCCATAAGAGAATTTGGAAAAGCGGCCTTTATTACGATTAAAGACAGAAGTGCCTCTTTTCAG ATATATCTAAAAAAGGGTGAAATAACCGAAGAAGAGTACGAAGTTTTCAAATCCACCGATGTGGGCGATTTTGCCGGGAT GTCCGGTTTTCTCTTTAAAACAAAAACCGGTGAACTAACACTGTTTACTGAAAACTACAGAATGCTGACAAAGGCACTGA GAGATCTACCGGAAAAATGGCACGGTCTGAAAGACGTGGAAAAGCGGTACAGGCAGCGTTATACAGACTTGATTGTCAAT GAGTATGTGAAAGATATTTTTATAACGCGCAGCAGAATAATTAAAGGGATAAGAGATTTCTTCAATGATAGAGATTTTCT CGAGGTTGAAACCCCCATGATGCAGCCTTTGGCAGGCGGAGCTACTGCAAAGCCATTCATTACTCACCATAATGCCCTTG ATATGCAGCTGTATCTGAGAATAGCGCCCGAATTGTACCTGAAAAGACTGGTTATCGGGGGGCTGGAGAAAGTATACGAA ATAAACAGAAATTTCAGGAATGAGGGGGTCTCCACAAAGCATAACCCTGAGTTCACGATGATAGAGTGGTATATGGCTTA TGCCGACTATTTCGATATGATGGCATTGACTGAAGATTTGATAGTCTCAGTGACAACAAAAATACTGGGAAAAAATTCAA TTGAATACGACGGCAAAGTGATAAATCTGCAAAAACCATGGCCGAAACTGACCCTTGAGGAATCCATTGAAAAATACGCA AACATACCCCAAAGCGATTTGAAAGACTATGAAAGTGTTAAAAAGATTGCAGAAAATCACAATATAAAAGTCGATAAGTC ATGGGGCAGAGGAAAAATTGTTCTGGAAATATTTGAAGAACTTGTTGAAGATAAACTTTTTCAGCCCACTTTTATAATTG ATTACCCTAAAGAAGTTTCTCCCTTATCCAAATCAAAAGCTGACAATCCCGATGTCACTGAGAGATTTGAGCTGTTTATA GGCGGCTTTGAAATGGCCAACGGATTTAATGAGCTCAACGATCCGATAGATCAGAAAGAGCGTTTTGAAAAGCAGGTGGA AGCAAAAGATGCCGGGGATGAAGAGGCTCATCTGATGGACAAAGATTTTCTGAGAGCACTGGAATACGGATTGCCGCCAA CTGCAGGTGAAGGTTTGGGCATAGACCGTCTTGTCATGCTTTTAACTAACAGCAAATCCATTAGAGAAGTAATACTCTTT CCTCATATGAGACCGGAAGAGGAAGAGGAGTAA Protein sequence : MDEHRYKKLQHLKDSDILPYVNSFKVPFSLAEIKEKYEGVQKSQLMENKYRFTVAGRVMSIREFGKAAFITIKDRSASFQ IYLKKGEITEEEYEVFKSTDVGDFAGMSGFLFKTKTGELTLFTENYRMLTKALRDLPEKWHGLKDVEKRYRQRYTDLIVN EYVKDIFITRSRIIKGIRDFFNDRDFLEVETPMMQPLAGGATAKPFITHHNALDMQLYLRIAPELYLKRLVIGGLEKVYE INRNFRNEGVSTKHNPEFTMIEWYMAYADYFDMMALTEDLIVSVTTKILGKNSIEYDGKVINLQKPWPKLTLEESIEKYA NIPQSDLKDYESVKKIAENHNIKVDKSWGRGKIVLEIFEELVEDKLFQPTFIIDYPKEVSPLSKSKADNPDVTERFELFI GGFEMANGFNELNDPIDQKERFEKQVEAKDAGDEEAHLMDKDFLRALEYGLPPTAGEGLGIDRLVMLLTNSKSIREVILF PHMRPEEEEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-116 | 52 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 4e-91 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Flexsi_0888 | YP_004603118.1 | Lysyl-tRNA synthetase | VFG1668 | Protein | 8e-117 | 52 |
