Gene Information

Name : Flexsi_1854 (Flexsi_1854)
Accession : YP_004604060.1
Strain : Flexistipes sinusarabici DSM 4947
Genome accession: NC_015672
Putative virulence/resistance : Virulence
Product : ATPase AAA-2 domain-containing protein
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1978420 - 1980819 bp
Length : 2400 bp
Strand : -
Note : PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); COGs: COG2716 Glycine cleavage system regulatory protein; InterPro IPR002912; KEG

DNA sequence :
ATGTTTGAACTTTTTACAGACAAGGCAAGACGTGTAATTTTGTATTCAAGAGAGGAAGCTGAAAAGCTTCTTCAACCTTA
TATAGATACCGAACATCTTCTTATCGGGATTCTTAAGGAAAGTACCGGTGTGTCGGCTGAAATTTTTAACAGAAGAGGCA
TCAATGTGATGCTTCTTATTTCTGACATTAAAAATATGACCGAAGAAGGTAAAAACCTTATGATAAAGGGCAGTCTTCCG
TTCAGCCCAAACGCCAAAAAGGTTCTGGAATATTCCATTGAGGAAGCCAGAATCCTCAAACATAAAAATATAAATCCTGA
ACATATCCTGCTGGGTATTTTAAAACTGAAAAAAGGCAAAGCTTCTGTAGTATTGAAAAAACTGGGTTTTGATTTGATTT
CCATGAGGGATGAGGTAAGGTATTTGTCCAAAGAGGAAAATACATCTACGAAGGTTGCCACACCAACACTTGATGAATTT
GGCAAGGATTTGACGGTATTAGCTTCTCAATATCAGCTTGATCCAGTAATAGGGAGAAATAAGGAAATTGACAGACTGAT
TCAAATTCTCTGCAGAAGGATAAAAAACAATGCCGTTTTGCTTGGTGAACCGGGTGTTGGTAAAACAGCGATTGTTGAAG
GTCTGGCTCAGCGTATGGTTTCTGAGTCTATCCCTGAAATTTTAAAAGATAAAAGGCTTATTTCACTGGATGTGGGAACA
TTAGTTGCCGGCACAAAATACCGCGGACAGTTTGAAGAACGGATGAAAAATATTCTAAAAGAGATTGAGAGTGCTGAAAA
TATAGTTGTTTTTATAGATGAGATTCACACAATAGTCGGAGCGGGTGCAGCAGAAGGTTCTGTTGATGCATCCAATATGC
TTAAGCCGGCATTGGCAAGGGGCACGCTCCAATGCATAGGGGCAACAACACTTAGTGAATACAGAAAACATATGGAAAAA
GACGGTGCTCTTGAGCGCCGTTTCCAATCGATTATTGTGGATCCGCCCGACAGCGGGGAAACTTTTGAAATTCTGAAAGG
TTTGAAGCGCCAATACGAAGATTTTCATAAGGTTTTTATACCGGACGATGTCCTAAAGGAAACTGTTTATCTGACTGACA
GATACGTGACAGATAAATTTCAGCCGGATAAAAGTATTGATGTGATAGACGAAACGGCTTCAAGAGTAAAACTTAGGCAC
AGCTTAATGCCGGATGATTTGCAGGAGCTGAAAAGTCAGATTGATTCATTAAAGCAAAAGAGGAAAAAATATATTGATAC
TGACAATTTCAACCAGATAGAAAGGTATTCATCCGAGATCGAACGTTACGGAGAGCTTTATCAGATGAAAGTTGAGGAAT
GGGAACAGACGGTGGATGACAACTGGCCAAGCCTTACTGTTGATAATGTGGCTGAAGTGGTCTCAATGATGACGGGAATT
CCTGTCCAGAAACTGACAGAAGAGGATACACGCAAAGCTACAAACATCGACAAGGAACTGAAAAATTATCTGATAGGCCA
GGATGAGGCTGTTGATACCGTTTCCAGGTCGATAAAAAGAAGTTTTGCCGGAATAAATAATCCGGAGCAGCCGATCGGTT
CCTTTATTTTTTTAGGCCCCACCGGCGTCGGCAAAACGGAGTTGGCAAAACGGATAGCTGAATCACTTTTCGGCAGTTCC
AACGCAATGATCAGAATAGATATGAGTGAGTTTATGGAAAAATTCAATGTTTCCAGACTTATCGGTGCCCCTCCGGGATA
TATCGGTTACAATGAGGGGGGTAAACTTACGGAAGCGGTGAGACGTAAACCTTATTCTGTTGTGCTGTTTGATGAAATTG
AAAAAGCACACCCTGATGTATTGAATATTCTTTTGCAAATACTGGATGACGGTTTTATCAATGATAATCTCGGTCATATG
GTAAATTTTAAAAATACGATTATTATAATGACATCGAATCTCGGAACCAAGTCCACGCTTACGGACAAGAGCCTGGGGTT
TACCAACAATGCTTCGCAGGATATTGACTATAAGACATTAAGGAATAATTCACTCAGAGAGCTTAAGGAAAGATTCCCAC
CTGAATTTATAAACAGACTGGACGGGCTTGTTGTTTTTAAACCGCTCTCAAAAGACGTTCTTTACAAGATTATTGATCAG
CAGGTTGAGGAAGTTAATGCACGAATTGCTAAATTAGGAAAACAGATCGTAATAAATGACGATGTTAAAGATTATATTCT
TTCCAATGAATACGATTATCATTTTGGTGCACGTCCTATAAAAAGGCTTATTCAAAAACATATTGAAGACAAATTGAGTG
AAGTACTTCTTGAAGGAAAGTATGCAAAGAGAAAAAAAATCAAAGTGATAGTTAACAATGGCAGAATTTCATTCAGATAA

Protein sequence :
MFELFTDKARRVILYSREEAEKLLQPYIDTEHLLIGILKESTGVSAEIFNRRGINVMLLISDIKNMTEEGKNLMIKGSLP
FSPNAKKVLEYSIEEARILKHKNINPEHILLGILKLKKGKASVVLKKLGFDLISMRDEVRYLSKEENTSTKVATPTLDEF
GKDLTVLASQYQLDPVIGRNKEIDRLIQILCRRIKNNAVLLGEPGVGKTAIVEGLAQRMVSESIPEILKDKRLISLDVGT
LVAGTKYRGQFEERMKNILKEIESAENIVVFIDEIHTIVGAGAAEGSVDASNMLKPALARGTLQCIGATTLSEYRKHMEK
DGALERRFQSIIVDPPDSGETFEILKGLKRQYEDFHKVFIPDDVLKETVYLTDRYVTDKFQPDKSIDVIDETASRVKLRH
SLMPDDLQELKSQIDSLKQKRKKYIDTDNFNQIERYSSEIERYGELYQMKVEEWEQTVDDNWPSLTVDNVAEVVSMMTGI
PVQKLTEEDTRKATNIDKELKNYLIGQDEAVDTVSRSIKRSFAGINNPEQPIGSFIFLGPTGVGKTELAKRIAESLFGSS
NAMIRIDMSEFMEKFNVSRLIGAPPGYIGYNEGGKLTEAVRRKPYSVVLFDEIEKAHPDVLNILLQILDDGFINDNLGHM
VNFKNTIIIMTSNLGTKSTLTDKSLGFTNNASQDIDYKTLRNNSLRELKERFPPEFINRLDGLVVFKPLSKDVLYKIIDQ
QVEEVNARIAKLGKQIVINDDVKDYILSNEYDYHFGARPIKRLIQKHIEDKLSEVLLEGKYAKRKKIKVIVNNGRISFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 2e-170 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Flexsi_1854 YP_004604060.1 ATPase AAA-2 domain-containing protein VFG0079 Protein 0.0 48
Flexsi_1854 YP_004604060.1 ATPase AAA-2 domain-containing protein VFG0080 Protein 9e-146 48