Gene Information

Name : Geoth_1986 (Geoth_1986)
Accession : YP_004588019.1
Strain : Geobacillus thermoglucosidasius C56-YS93
Genome accession: NC_015660
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1895441 - 1896271 bp
Length : 831 bp
Strand : -
Note : PFAM: Integrase, catalytic core; KEGG: gmc:GY4MC1_1913 integrase catalytic region

DNA sequence :
ATGTGTCAAGTGCTCGGTGTTTCCAAAAGTGGGTATTACGACTGGCTCAAGCGCGCGAAAAGTAAACAGAAAGAACGAAA
AGGACAACTCACTCAACAGATTCGAAATGAGTATCTAAAGTCCCGTAAGATTTACGGAAGCCCAAAAATTACGCAAGAAC
TACACAAACAAGGGATTCGTGTGTCTCAAAAGACGGTCGCTCGCATCATGAGCGAAGAAGGATTGAGATCCATTACCGTC
CGTCAATTCAAAGCCACTACGAACAGCAACCATCCTTACAACGTATATGACAATCTATTGAAACAAAACTTCCAAGCAAC
GGCTCCGAATGAAGGATGGATGGCGGATATTACGTACATTCCTACCGACGAAGGTTGGTTGTATTTAGCGAGCATCATGG
ATTTATATACTCGCAAGATTGTAGGATGGTATATCGATACACGAATGACGAAAGAGTTAGTCATTAAAGCGTTACAACGG
GCTCTAAACAGCGAAAAACCAACGGAACGAGTGATTCATCATTCGGATCGTGGGAGTCAATATGCTTCGAATAACTATCA
GCAGCTTTTACAGGAACATCATTTTCAAGTGAGCATGTCGAGACGTGGGAACTGTTACGACAACGCTTGTATGGAGTCGT
TTCATAGCTTAATCAAAAAAGAGTGTATCTATCCGAATCGATTCCATACGCGGAAAGAAGCGAAACAAGCCATTTTTGAG
TACATCGAATGCTTCTACAACCGAAAAAGAAGTCATTCCGCCCTCGGCTATGTATCGCCATGTGAATTTGAGGCTGCTTA
CTACGCTAATCAGAGAAAAGTAGCTGCCTAA

Protein sequence :
MCQVLGVSKSGYYDWLKRAKSKQKERKGQLTQQIRNEYLKSRKIYGSPKITQELHKQGIRVSQKTVARIMSEEGLRSITV
RQFKATTNSNHPYNVYDNLLKQNFQATAPNEGWMADITYIPTDEGWLYLASIMDLYTRKIVGWYIDTRMTKELVIKALQR
ALNSEKPTERVIHHSDRGSQYASNNYQQLLQEHHFQVSMSRRGNCYDNACMESFHSLIKKECIYPNRFHTRKEAKQAIFE
YIECFYNRKRSHSALGYVSPCEFEAAYYANQRKVAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 2e-58 50
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 1e-58 50
unnamed AAF09030.1 unknown Not tested SHI-O Protein 1e-58 50
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 1e-58 50
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 1e-58 50
unnamed AAF09022.1 unknown Not tested SHI-O Protein 6e-59 50
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 2e-58 50
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 2e-58 50
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 1e-57 49
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 9e-55 44
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-52 44
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 1e-52 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-52 44
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 9e-54 44
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 9e-54 44
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 9e-54 44
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-33 41
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Geoth_1986 YP_004588019.1 integrase catalytic subunit VFG1706 Protein 8e-59 50
Geoth_1986 YP_004588019.1 integrase catalytic subunit VFG1631 Protein 5e-55 44