Gene Information

Name : FsymDg_3880 (FsymDg_3880)
Accession : YP_004585078.1
Strain : Frankia sp. 4085684
Genome accession: NC_015656
Putative virulence/resistance : Virulence
Product : Lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : 6.1.1.6
Position : 4555385 - 4556821 bp
Length : 1437 bp
Strand : -
Note : PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: fra:Francci3_0418 lysyl-tRNA synthetase

DNA sequence : 
GTGAGCGGGCCCCGGTCCGGTTATCGCACCGACTCGGTGGCCGCCGGCGCCAGGGAGGCGCCTGACGGCACCCCTGTCCG
CCTCGCCGGCAGAGTGGTGCTCTGGCGTCGGATGGGTGGTCTGATCTTCGGGCACATCCAGGACCGCAGCGGGCGTGTCC
AGGTCTCCCTGTCCAGGGATGAGCTGGGCGCGGACACCATCAGGGAGTGGTCCCGCGCGCTGAAGATCGGCGACTTCGTC
GGGGTCGCCGGCCGTCTCTACACCACCCGTCGTGGTGAGCGGACGGTAGCGGTATCCGATCTCACCGTGCTCAACCGGAC
GGCGCGCGCGTTGCCGGACAAATGGCAGGGCCTGTCGAACGTGGAGGCCCGCTACCGCCGCCGCTATCTCGACCTGCTGG
TCAACGACGAGTCCCGGGCGCGGTTCCGGACCAGGACGAAGGCGATCCAGCGGATCCGCCGGTTCCTCGACGACAACGAC
TTCCTCGAGGTCGAGACGCCGATCCTGCAGGAGGCGGCCTCCGGCGCCGCCGCCCGGCCGTTCGTCACCCACCACAACGC
GCTCGACGAGGACTTCTACCTGCGGATCTCACCGGAGACGTTCCTCAAGCGCGTCGTCGTTGGCTCCTTCGACCGTGTCT
ACGAGCTCGGCCGCAACTTCCGCAACGAAGGCATGGACTCCTCCCACCTCCAGGAGTTCACGATGCTGGAGTGGTACGCC
GCCTACTGGGACTACCGCGACAACATGGCCTTCGTCCGCGAGCTGATCCTGGCGGTGCTCGACGACGTCCTCGGCACCCG
TACCGTCACCTACGAGGGTGTGAAGCTGGACTTCGGCGCCGACTGGCCGGAGCTGGACTACCGGGTCGAGGTCGCCCGGC
GCACCGGCATCGACCTCGCCGTGGTGCGCGACCTGCCGACCCTGCGGGAGCGGGTCGCCGGCCTCGGGCTGGACGTCGAG
AACGCGCCGTCGTACGCGGCACTCGTCGACCTGCTGTACAAGAAGACGGTCCGGCCCGAGCTCGTCCAGCCGTGCTTCCT
GGTGCACCACCCGGCGGAGCTGGTGCCGCTGGCCCGGCGCAGCGACGACGACCCCACCCGGCTCGACATGTTCCAGGTCG
TGGTGAACGGTTGGGAGATCGTCAAGGCGTACTCGGAGCTGGTCGACCCGGCCGAGCAGCGAACCCGGCTGGAGGAGCAG
GCCGAACTGCGCGAGGCCGGCGACGACGAGACGATGATGCTGGAGGAGGACTTCATCGAGGCGATGGAGTACGGGATGCC
ACCGATGTCCGGCCTCGGCCTCGGCATCGACCGGTTCACCGCCCTGCTCACCGATGCGCCCACCCTGCGCGACGTCGTCC
TCTTCCCTACCATGCGCGGCGCCAGAAAAGGCCAGCACGCCCCCGACGACCAGGCTGCTCCCGACGCCGACGCCTGA

Protein sequence : 
MSGPRSGYRTDSVAAGAREAPDGTPVRLAGRVVLWRRMGGLIFGHIQDRSGRVQVSLSRDELGADTIREWSRALKIGDFV
GVAGRLYTTRRGERTVAVSDLTVLNRTARALPDKWQGLSNVEARYRRRYLDLLVNDESRARFRTRTKAIQRIRRFLDDND
FLEVETPILQEAASGAAARPFVTHHNALDEDFYLRISPETFLKRVVVGSFDRVYELGRNFRNEGMDSSHLQEFTMLEWYA
AYWDYRDNMAFVRELILAVLDDVLGTRTVTYEGVKLDFGADWPELDYRVEVARRTGIDLAVVRDLPTLRERVAGLGLDVE
NAPSYAALVDLLYKKTVRPELVQPCFLVHHPAELVPLARRSDDDPTRLDMFQVVVNGWEIVKAYSELVDPAEQRTRLEEQ
AELREAGDDETMMLEEDFIEAMEYGMPPMSGLGLGIDRFTALLTDAPTLRDVVLFPTMRGARKGQHAPDDQAAPDADA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 2e-94 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FsymDg_3880 YP_004585078.1 Lysyl-tRNA synthetase VFG1668 Protein 1e-94 43