Gene Information

Name : FsymDg_0037 (FsymDg_0037)
Accession : YP_004581550.1
Strain : Frankia sp. 4085684
Genome accession: NC_015656
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 42048 - 43193 bp
Length : 1146 bp
Strand : -
Note : PFAM: Bacterial transport system permease protein; KEGG: sro:Sros_3467 transport system permease protein

DNA sequence :
GTGACCAACAGGCTCCGAGTCGCATCAACGGGGACGACCGCCCCACCCAACTCCGTTCCGACAGGCACTGCTCCGACGAG
CGCCACGCCGGCGGACGGGCCGGTCACAGGAAGGCCCGCTCCCCGGGCCGCTTCGGGACGGCGGGGGTTGCACCCGGCAC
GGCGACCGGTCCTGCTGGGGGCCTCCCTCTGCGTTCTGGCGCTCCTGTGCGCCCTGTCGATCGCCATCGGTAGCCGACCG
GTACCACTGGACCAGGTCCTGCGAGTACTGATCCATCGTGACGACGGGGACGTCGAGGCCATCGTGTGGGGGCTGCGCGT
CCCACGCACCCTGCTCGGTCTGCTCGTCGGCGCCGCCCTCGGTCTCGCCGGCACGATCATGCAGACGCTGACCCGCAACC
CGCTGGCGGATCCCGGGCTGCTCGGGGTGAGCGCCGGTGCCACGCTGGCGGTCGTCCTGTCCGTGTCGGCGTTCGGGCTG
ACCTCGCTCTACGGCTACATCTGGTTCGCCTTCGCCGGCGCTCTGGCCGCCAGCGTGCTCGTGTACCTGCTGGGCGCCGC
CGGGCGCTCCGGCCCGACCCCCGTCAAACTCGCCCTGGCCGGGGTCGGGGTGACCGCCCTGCTCGGCTCGCTGACCAGCG
CCATCGCGCTGACCAGCCCGGAGGCGCTGAACCGCTACCGGTACTGGTCCGCGGGATCCATCGCGGGCCGCGACGGCACG
CTCGTGGCGCAGGCCGCGCCGTTCGTCCTGACCGGGGTGGTGCTCGCGCTCAGGCTCGCGCCCGGGCTGAACAGCCTCGC
GCTCGGCGACGACGTCGCCGCCGCCCTCGGCCGGCGGGTCGGCCTCATCCGGTTGCAGGGTGCCGTCGCCGTGACGGTAC
TCACCGGGGGTGCCGTGGCCGTGGCCGGACCGCTGGTCTTCATCGGACTGGTCGTCCCGCACGCCACCCGGATGATCGCG
GGGGCCGACCACCGGTGGCTGCTGCCGACCTCGATGGTGCTGGCCTCCTGCCTGATCCTGGCGGCCGACGTGGTCGGACG
GGTGGTCGCCCGCCCACAGGAGATCAACGTCGGCATCATCGTCGCCTTCCTCGGCGCGCCGTTCTTCGTCATGTTGGTCC
GCCGCCGGCGTCTCGCGGAGCTCTAG

Protein sequence :
MTNRLRVASTGTTAPPNSVPTGTAPTSATPADGPVTGRPAPRAASGRRGLHPARRPVLLGASLCVLALLCALSIAIGSRP
VPLDQVLRVLIHRDDGDVEAIVWGLRVPRTLLGLLVGAALGLAGTIMQTLTRNPLADPGLLGVSAGATLAVVLSVSAFGL
TSLYGYIWFAFAGALAASVLVYLLGAAGRSGPTPVKLALAGVGVTALLGSLTSAIALTSPEALNRYRYWSAGSIAGRDGT
LVAQAAPFVLTGVVLALRLAPGLNSLALGDDVAAALGRRVGLIRLQGAVAVTVLTGGAVAVAGPLVFIGLVVPHATRMIA
GADHRWLLPTSMVLASCLILAADVVGRVVARPQEINVGIIVAFLGAPFFVMLVRRRRLAEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 3e-20 41
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 3e-20 41
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 3e-20 41
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 3e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FsymDg_0037 YP_004581550.1 ABC transporter VFG0926 Protein 1e-26 49