Gene Information

Name : FsymDg_0035 (FsymDg_0035)
Accession : YP_004581548.1
Strain : Frankia sp. 4085684
Genome accession: NC_015656
Putative virulence/resistance : Virulence
Product : iron-chelate-transporting ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : 3.6.3.34
Position : 39923 - 40864 bp
Length : 942 bp
Strand : -
Note : PFAM: ABC transporter-like; KEGG: scb:SCAB_85501 siderophore transport system ATP-binding protein; SMART: ATPase, AAA+ type, core

DNA sequence : 
GTGACGTTCCAGCCACCATCCTGGCCGACGGCACCGGCTGACCTCCCCGACACGGGCTCCACGAGCAGCCGCCCCACGAG
CGGCACCGCCACGGACGGCAGCCCCACGGACGAGCGTGGCCCGGGCCTGCCCGAGCTGCGGGCGAGCGGGCTGCGGCTGG
CCTACGGCAGCACAGTGGTCGTCGACGACCTCGACCTGGTCGTCCCCGCCGGCCGGATCAGTGTGATCGTCGGCGCCAAC
GCCTGCGGCAAGTCCACGCTGCTGCGTGCGCTGGCCCGGCTGCTGCGCCCGCGGGCGGGCGCGGTGCACCTGGACGGGCG
CTCCATCCACTCGATGCCGACCAGGCGGGTCGCCCGGCAGTTGGGGATCCTCCCGCAGTCCCCGGTCGCGCCCGCGGGGC
TGACCGTGGTCGACCTGGTCGGCCGCGGCCGTTCCCCGCACCAGACCTGGTGGCGCCAGTGGTCCGCCGCGGACGAACAG
GCCGTCACCGATGCGCTGCGGGCGACGGCCATGCTGGAGCTGGCCGGCCGGCCGGTGGACGAGCTCTCCGGCGGCCAGCG
CCAGCGGGCGTGGATCGCGATGGCGGTGGCCCAGGGCACCCCCGTGCTGCTGTTGGACGAACCGACGACCTTCCTGGACC
TCGCCCATCAGATCGACGTCCTCGACCTGGTCGTCGACCTGAACCGGCGGGAGAAGCGCACGGTGGTGATGGTCCTGCAC
GACCTGAACCAGGCGTGCCGCTACGCAGACCACATGATCGCGATGCGCTCCGGCCGCATCGTCACCCAGGGGCCACCCGC
CGAGGTGGTGACCGCCGAGCTGGTGGAGGAGGTGTTCGGCCTGCGTTGCCAGGTGGTGGCCGACCCGGTCAGCGGCACCC
CGCTGGTCATCCCGATGGGACGCCACCACAGCCCGAGGCCGGCCGCCGCCCTGAAGTCCTGA

Protein sequence : 
MTFQPPSWPTAPADLPDTGSTSSRPTSGTATDGSPTDERGPGLPELRASGLRLAYGSTVVVDDLDLVVPAGRISVIVGAN
ACGKSTLLRALARLLRPRAGAVHLDGRSIHSMPTRRVARQLGILPQSPVAPAGLTVVDLVGRGRSPHQTWWRQWSAADEQ
AVTDALRATAMLELAGRPVDELSGGQRQRAWIAMAVAQGTPVLLLDEPTTFLDLAHQIDVLDLVVDLNRREKRTVVMVLH
DLNQACRYADHMIAMRSGRIVTQGPPAEVVTAELVEEVFGLRCQVVADPVSGTPLVIPMGRHHSPRPAAALKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-54 54
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-48 48
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 8e-48 48
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 7e-48 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-48 48
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-43 47
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-41 47
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-50 44
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-50 44
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-45 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-45 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-45 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-45 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FsymDg_0035 YP_004581548.1 iron-chelate-transporting ATPase BAC0164 Protein 4e-43 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FsymDg_0035 YP_004581548.1 iron-chelate-transporting ATPase VFG0925 Protein 3e-58 54
FsymDg_0035 YP_004581548.1 iron-chelate-transporting ATPase VFG1042 Protein 4e-43 47