Gene Information

Name : FsymDg_0339 (FsymDg_0339)
Accession : YP_004581828.1
Strain : Frankia sp. 4085684
Genome accession: NC_015656
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 399160 - 400050 bp
Length : 891 bp
Strand : -
Note : PFAM: Integrase, catalytic core; KEGG: fre:Franean1_3089 integrase catalytic region

DNA sequence : 
GTGATCGATAAGTTCGAGCTGATCGCCGCGGAGAAGGACAACTACCCGATACGCAAAATGTGCCAGTGGCTCGTGGTGTC
GACGTCCGGTTTCTACGACTGGTACCAGCGACCGGTGTCGTCCCGGACCCGCCGGCACACCACCCTGGACACCCAGGTGC
GGGCGTTGTTCGCCGCCTCGCGCCAGACCTACGGCGCGCGGCGGATCGCCGCCGCTCTGACCGCGTCGGGCCAGCCCACC
TCGGTCCCGCTCGCCCGACGGATCATGCGCCGAGCAGGGCTGAAGGCCTGCCAGCCCAGGGCCTACCGCCGCACCACGAT
CCCCGGCCAGGCGCCGGTGCCCACCGACCACGTCCGCCGCGACTTCACCGCCACCCGCCCCGGGGCCAAGCTCGTCGGTG
ACATCACCTATGTCCGTACCGGCGAAGGCTGGCTGTATCTCGCCACGGTCATCGACTGCTATTCACGGAAGGTTCTCGGC
TGGTCGATGGCCAGTCACATGCGGACCGAACTCGTCGTCGACGCATTCACCATGGCCGCGTCCCGCACCACCCTTGCACC
GAACGCGGTTTTTCACTCGGATCGCGGTACGCAATACACGTCCGACGCCTACCATCGCACGCTGGCACGACACGGCGTGC
GACCTTCCGTAGGCGCCACCGGAGTGTGCTGGGACAACTCCGCCGCCGAATCCTTCTTTGGCACCCTGAAAAACGAACTC
GTCTATCGGGAAATTTACCTAACCCGTCGTGCCGCCCGCAGTGCGATCGCCGAGTACATCGAAGTCTTCTACAACCGGCA
GCGACTCCACTCCACCCTCGGCTACCACACCCCGGAACACGTCGAACGTCTCTACCTGACGAGTCGGACATCAATACCAG
AGGCGGCGTAA

Protein sequence : 
MIDKFELIAAEKDNYPIRKMCQWLVVSTSGFYDWYQRPVSSRTRRHTTLDTQVRALFAASRQTYGARRIAAALTASGQPT
SVPLARRIMRRAGLKACQPRAYRRTTIPGQAPVPTDHVRRDFTATRPGAKLVGDITYVRTGEGWLYLATVIDCYSRKVLG
WSMASHMRTELVVDAFTMAASRTTLAPNAVFHSDRGTQYTSDAYHRTLARHGVRPSVGATGVCWDNSAAESFFGTLKNEL
VYREIYLTRRAARSAIAEYIEVFYNRQRLHSTLGYHTPEHVERLYLTSRTSIPEAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 3e-43 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-43 41
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 8e-43 41