Gene Information

Name : FsymDg_1568 (FsymDg_1568)
Accession : YP_004582949.1
Strain : Frankia sp. 4085684
Genome accession: NC_015656
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1844295 - 1844999 bp
Length : 705 bp
Strand : +
Note : KEGG: fri:FraEuI1c_3975 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receive

DNA sequence : 
ATGCGGCTGCTGGTGGTGGAGGACGAGACACGGGCCGCCGCGCTGCCGCGCCGAGGCCTGGTGGAGGAGGGATTCGCCGT
CGACATCGGCTCGGACGGCGTCGACGCGGTGTGGCAGGCCGGCGAGGTGGCCTACTACGTGATCGTTCTGGATCTGATGC
TGCCGGGGATCGACGGGTTCGAGGTGCGCCGGCGCCTGCGGGCGGACGGTCGTTGGGCGCCGGTGCTGATGCTGACCGCC
CGCGGAGAGATCGCCGACCGGATTCGCGGTCTGAACGTCGGCGCGGACGACTACCTGCCGAAACCGTTCAGCTTCGGGGA
GTTGGTTGCCCGGTTGCGGTTGCGGGTGCGGTTGCTGATGCGGCGCGGAGCGGTGGCCCGGCCGGCCGTACTGGAGGTCG
GCGGTCTGCGGCTGGACCTGGCCGCGCGGACGGCGAGCCGGGACGAGACACCGCTGGATCTCTCATCGAAGGAGTTCGCG
CTGCTGGAGTACCTGGTGCGTCACCCGGGCGAGGTTCTGACCCGAACCGTGATCATGGAGTACGTGTGGGACTTTGCCTC
TGACGCCACCTCCAACGTGGTCGACCAGTACGTCACCTACCTGCGTCGCAAGATCGACAAGTCGTTCGGGGTGCCCCAGG
TGGAGATGGTGCGCGGGGTCGGCTACCGACTACGGGCCGACACCGGCCAGCAGCGGCTGGGCTGA

Protein sequence : 
MRLLVVEDETRAAALPRRGLVEEGFAVDIGSDGVDAVWQAGEVAYYVIVLDLMLPGIDGFEVRRRLRADGRWAPVLMLTA
RGEIADRIRGLNVGADDYLPKPFSFGELVARLRLRVRLLMRRGAVARPAVLEVGGLRLDLAARTASRDETPLDLSSKEFA
LLEYLVRHPGEVLTRTVIMEYVWDFASDATSNVVDQYVTYLRRKIDKSFGVPQVEMVRGVGYRLRADTGQQRLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-34 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FsymDg_1568 YP_004582949.1 winged helix family two component transcriptional regulator BAC0083 Protein 1e-39 46
FsymDg_1568 YP_004582949.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-35 45
FsymDg_1568 YP_004582949.1 winged helix family two component transcriptional regulator BAC0638 Protein 4e-30 45
FsymDg_1568 YP_004582949.1 winged helix family two component transcriptional regulator BAC0125 Protein 3e-37 44
FsymDg_1568 YP_004582949.1 winged helix family two component transcriptional regulator BAC0111 Protein 3e-40 44
FsymDg_1568 YP_004582949.1 winged helix family two component transcriptional regulator U82965.2.orf14.gene. Protein 1e-20 43
FsymDg_1568 YP_004582949.1 winged helix family two component transcriptional regulator BAC0347 Protein 1e-36 42
FsymDg_1568 YP_004582949.1 winged helix family two component transcriptional regulator BAC0308 Protein 5e-33 42
FsymDg_1568 YP_004582949.1 winged helix family two component transcriptional regulator Y16952.3.orf35.gene. Protein 8e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FsymDg_1568 YP_004582949.1 winged helix family two component transcriptional regulator VFG1386 Protein 1e-32 43
FsymDg_1568 YP_004582949.1 winged helix family two component transcriptional regulator VFG0596 Protein 7e-35 42
FsymDg_1568 YP_004582949.1 winged helix family two component transcriptional regulator VFG1389 Protein 3e-29 41