|
Name : FsymDg_1324 (FsymDg_1324) Accession : YP_004582725.1 Strain : Frankia sp. 4085684 Genome accession: NC_015656 Putative virulence/resistance : Unknown Product : phosphomethylpyrimidine synthase Function : - COG functional category : H : Coenzyme transport and metabolism COG ID : COG0422 EC number : - Position : 1548530 - 1550374 bp Length : 1845 bp Strand : + Note : PFAM: Thiamine biosynthesis protein ThiC; manually curated; TIGRFAM: Thiamine biosynthesis protein ThiC; KEGG: fre:Franean1_5609 thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC DNA sequence : GTGTCCGCGCCCGTCACCGGCGGAACACCCGTCACTGGCGGAACACCCGTCACCGGCGGCGCGCCCGTCTCCACGGGGCA TGACGCTCGGAGATCCGCTGCCGGAGGGCCCGACGGCGTGTCCACGCCCGGTGGCTCACCCGCGCCGGTCACCTCCGGCC CGCTGCCCGGCAGCCGCAAGACCTATCTGGTCGGCTCCGCGGACGGACTGCGGGTGCCCATGCGCGAGGTGCTGCTCTCC ACCGGCGACAGCGTGATCCTGTACGACACCTCCGGCCCGTACACCGACACCGAGCAGGTCACCGACGTGCGCCAGGGGCT GCCCCCGCTGCGGGACGCCTGGATCACCGCCCGCGGCGACACCGAGACCTACCAGAACGCCTCGCCGCAGGTCCGGCACG GAGAGCGGCTGCGCCGGCCGTCCCCCAGGCGGGCGCTGCCCGGCCGGGCCGTCACCCAGCTCGCCTACGCCCGCCGGGGC GAGATCACACCGGAGATGGAGTTCGTCGCGCTGCGCGAGGGCCTGCCGGTCGAGACCGTGCGGGCGGAGATCGCCGCCGG CCGCGCGGTGCTGCCCGCGAACGTCAACCATCCCGAGTCCGAGCCGATGGCGATCGGCAGCGCCCTCCTGGTGAAGATCA ACGCGAACATCGGGAACTCGGCGGTGACCTCGTCCATCGAGGAGGAGGTGGACAAGATGGTGTGGGCGACCCGCTGGGGC GCCGACACCGTCATGGACCTGTCCACCGGCCGTGACATCCACACCACCCGGGAATGGATCATCCGGAACTCGCCGGTCCC GATCGGAACCGTGCCGATCTACCAGGCGCTGGAGAAGGTCGGCGGCAAGGCCGAGGAACTGTCCTGGGAGGTCTACCGGG ACACCGTCATCGAGCAGTGCGAGCAGGGCGTGGACTACATGACCGTCCACGCCGGAGTGCTGCTGCGCTACGTGCCGCTG ACCGCGCGGCGCAAGACCGGGATCGTCTCCCGCGGCGGTTCCATCCTGGCCGCCTGGTGCCTGGCCCACCACCAGGAGAA CTTCCTCTACACCCACTTCGCCGAGCTGTGCGAGATCCTGCGCGCCTACGACGTGACCTTCTCGCTCGGGGACGGGCTGC GCCCCGGTTCGATCGCCGACGCCAACGACGCCGCCCAGCTCGCGGAGCTGGCCACCCTCGGGGAACTGACCTCGGTGGCG TGGGAGCACGACGTCCAGGTCATGATCGAGGGCCCCGGCCACGTCCCGATGAACAAGATCAAGGAGAATGTGGACCTGCA GCGTGAGCTGTGCCACGACGCCCCCTTCTACACCCTCGGGCCGCTGACCACGGACATCGCGCCCGGCTACGACCACATCA CCTCCGCGATCGGCGCCGCGATGATCGGCTGGTACGGCACGGCGATGCTCTGCTACGTCACCCCCAAGGAGCATCTCGGC CTGCCCGACCGCGACGACGTCAAGGCCGGAGTGATCGCCTACAAGATCGCCGCGCACGCGGCTGACCTGGCCAAGGGGCA TCCGGGCGCCCAGGCATGGGACGACGCCCTCTCCGACGCGCGGTTCGACTTCCGCTGGACCGACCAGTTCCACCTCGCGC TCGACCCGGAGACCGCCAAGGCCTTCCACGACGAGACCCTGCCCGCGGCGCCCGCGAAGTCGGCGCACTTCTGCTCGATG TGCGGCCCGCACTTCTGCTCGATGCGAATCACACAGGACGTGCGCAAGTACGCCGAGGAGCACGGCATTGCGGAGACCGA CGCCGTGGAGGCCGGCCTGCGGGAGAAGTCGGCGGAGTTCGCCGCCCGCGGCAGCCATGTCTACCTCCCGATCGCGGAGT CGTAG Protein sequence : MSAPVTGGTPVTGGTPVTGGAPVSTGHDARRSAAGGPDGVSTPGGSPAPVTSGPLPGSRKTYLVGSADGLRVPMREVLLS TGDSVILYDTSGPYTDTEQVTDVRQGLPPLRDAWITARGDTETYQNASPQVRHGERLRRPSPRRALPGRAVTQLAYARRG EITPEMEFVALREGLPVETVRAEIAAGRAVLPANVNHPESEPMAIGSALLVKINANIGNSAVTSSIEEEVDKMVWATRWG ADTVMDLSTGRDIHTTREWIIRNSPVPIGTVPIYQALEKVGGKAEELSWEVYRDTVIEQCEQGVDYMTVHAGVLLRYVPL TARRKTGIVSRGGSILAAWCLAHHQENFLYTHFAELCEILRAYDVTFSLGDGLRPGSIADANDAAQLAELATLGELTSVA WEHDVQVMIEGPGHVPMNKIKENVDLQRELCHDAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWYGTAMLCYVTPKEHLG LPDRDDVKAGVIAYKIAAHAADLAKGHPGAQAWDDALSDARFDFRWTDQFHLALDPETAKAFHDETLPAAPAKSAHFCSM CGPHFCSMRITQDVRKYAEEHGIAETDAVEAGLREKSAEFAARGSHVYLPIAES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00317 | YP_008207782.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR25 | Protein | 0.0 | 63 |
| BJAB0868_00321 | YP_008211647.1 | Thiamine biosynthesis protein ThiC | Not tested | AbaR26 | Protein | 0.0 | 63 |
| thiC | YP_001598318.1 | thiamine biosynthesis protein ThiC | Not tested | MDA | Protein | 4e-175 | 62 |
