Gene Information

Name : Lacal_0128 (Lacal_0128)
Accession : YP_004578409.1
Strain : Lacinutrix sp. 5H-3-7-4
Genome accession: NC_015638
Putative virulence/resistance : Virulence
Product : UDP-glucose 4-epimerase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : 5.1.3.2
Position : 136610 - 137593 bp
Length : 984 bp
Strand : -
Note : KEGG: hmg:100202205 similar to UDP-glucuronate decarboxylase 1; PFAM: NAD-dependent epimerase/dehydratase

DNA sequence : 
TTGAGTTATAAATATCATACCGAAGATTTTTCAAAACTACAGTTTTTAGTTACTGGAGGCGCAGGCTTTATAGGCTCTCA
TATTGTTTCTTATTTACTAGCGCATCAAGCTAAAAAAGTACGTGTTTTAGATAATTTGGCAACAGGATTTAAAACCAATT
TAGAGCCCTTTTTTAATCAAGCTAATTTTGAATTTATAGAAGGCGATATTAGAGATTTAGATACTTGCAAAGCAGCTATG
CAGGATATGGATTATGTGAGTCATCAAGCTGCATTAGGCTCTGTGCCTAGATCTATAGATGATCCTGTGACCTCAAATGC
AGTAAATGTATCTGGTTTTTTAAATATGTTAATAGCTTTAAAAGATAATACAACTGTAAAACGTATGGTTTATGCGGCTT
CAAGTTCAACCTATGGCGATAGTACTATTTTGCCTAAAGTAGAGTCTTCTATTGGTAGTCCATTATCACCTTATGCAGTA
ACAAAGTACGTAAACGAGTTGTATGCAGATGTGTTTGGTAAAACTTATAATACAGACACTATTGGGTTACGTTATTTTAA
TGTATTTGGGCCAAAGCAAAATCCTAATGGTGCTTATGCAGCAGTAGTGCCTTTGTTTATGAAAGCTTTGGTAGATAATG
TGCCAGCGACAATTAATGGAGACGGTTCTCAAACTAGAGATTTCACCTATGTTTCAAATGCAGTACAAGGTAATATAAAA
AGTTTTTTCGCATCTGGAGAAGCAAAAAATGAAGTGTTTAATATTGCTTGTAATGATCGTATTAGTATTATAAAACTGTG
GGAGACCTTAGGTGTTTTAGCAAATAAGTCTACCAAAGTTAAGTTTGGGCCTAAGCGTTTAGGAGATGTAAAAGACTCTT
TAGCAGATATAAGTAAAGCGGAACGGCTAATAGGTTATAAACCTAAGTATAGCACGGTAGAAGGCTTAAAAGCAACTTGG
GATTATTTTGTAGCACAGTCTTAA

Protein sequence : 
MSYKYHTEDFSKLQFLVTGGAGFIGSHIVSYLLAHQAKKVRVLDNLATGFKTNLEPFFNQANFEFIEGDIRDLDTCKAAM
QDMDYVSHQAALGSVPRSIDDPVTSNAVNVSGFLNMLIALKDNTTVKRMVYAASSSTYGDSTILPKVESSIGSPLSPYAV
TKYVNELYADVFGKTYNTDTIGLRYFNVFGPKQNPNGAYAAVVPLFMKALVDNVPATINGDGSQTRDFTYVSNAVQGNIK
SFFASGEAKNEVFNIACNDRISIIKLWETLGVLANKSTKVKFGPKRLGDVKDSLADISKAERLIGYKPKYSTVEGLKATW
DYFVAQS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 8e-60 49
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 8e-60 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lacal_0128 YP_004578409.1 UDP-glucose 4-epimerase VFG0430 Protein 3e-60 49