Gene Information

Name : Lacal_0113 (Lacal_0113)
Accession : YP_004578394.1
Strain : Lacinutrix sp. 5H-3-7-4
Genome accession: NC_015638
Putative virulence/resistance : Virulence
Product : UDP-N-acetyl-D-glucosamine 2-epimerase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0381
EC number : 5.1.3.14
Position : 123014 - 124141 bp
Length : 1128 bp
Strand : -
Note : TIGRFAM: UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing; KEGG: fjo:Fjoh_0304 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase

DNA sequence : 
TTGAGTAATATTAAAAAAATAGCATTTTTAACAGGTACACGAGCAGATTTTGGTAAAATAAAACCTTTAATACAAAGCGT
AGAGACTGAAACAGGATTTGAGGCTCATGTGTTTGTAACCGGTATGCATTTACTTGAAGCCTATGGTTATACCTTAATAG
AAGTAGAACGCTGCGGTTTTAAGCATATTTCTACTTTTAATAACCATACGCATGAAGCTACCATGGATTTAACGTTAGCA
AAAACAATAACAGGTTTTTCTAATTTTATAGCAGAAACACAACCCGATTTAATTGTTATACATGGTGATAGGGTAGAAGC
TTTAGCAGGTGCGATTGTAGGCAGTTTAAACAATATATTAGTAGCACATATTGAAGGTGGTGAACTTTCAGGAACAATAG
ATGAGCTTATACGACATGCTACTAGTAAAATGAGTCATATTCATTTTGTGGCAAATGCACAAGCCAAGCAGTTGTTGGAA
CAAATGGGAGAATTGCCAGATTCTATATATACTATAGGCTCACCAGATATAGATGTTATGTTTTCTAATACTTTGCCTAA
ACTAAAAACGGTGCAAACGTATTATGATATTCCGTTTTCAAGTTATGCAGTAGCCATGTTTCATCCTGTAACTACAGAGC
ATGAGGATATGGACGTTTATGCAGCGCAGTTTGTAACCGCATTAGAGCAAAGTAATAAACATTATGTTGTTATTTATCCT
AATAACGATTTGGGCAGTCAAGCCATATTAAATGTATATAAACGTTTAAAAAACAACCCGAATTTTAGAATATTTCCTTC
TATACGTTTTGAATATTTTTTAACCTTATTAAAGCATGCTGATTTTATAATAGGTAATAGTAGTGCAGGTGTTAGAGAAG
CGCCATATTATGGTATTCCAACAATAAATATAGGCACACGTCAAGATAATAGAGCGGTATTAAACTCTATAATAAATACG
GATTACACCACAGAAGCTATTTTAGCAGCGATATTACAAGACAAAATAAAACAACCCAAAGAACTCCAAGCATTTGGTAA
CGGAAATAGTGCCAAAGCTTTTATAGATTCGTTATCATTAGATGCTTTTTGGGAGATCAATCATCAAAAACAATTTAGAG
CTTTATAA

Protein sequence : 
MSNIKKIAFLTGTRADFGKIKPLIQSVETETGFEAHVFVTGMHLLEAYGYTLIEVERCGFKHISTFNNHTHEATMDLTLA
KTITGFSNFIAETQPDLIVIHGDRVEALAGAIVGSLNNILVAHIEGGELSGTIDELIRHATSKMSHIHFVANAQAKQLLE
QMGELPDSIYTIGSPDIDVMFSNTLPKLKTVQTYYDIPFSSYAVAMFHPVTTEHEDMDVYAAQFVTALEQSNKHYVVIYP
NNDLGSQAILNVYKRLKNNPNFRIFPSIRFEYFLTLLKHADFIIGNSSAGVREAPYYGIPTINIGTRQDNRAVLNSIINT
DYTTEAILAAILQDKIKQPKELQAFGNGNSAKAFIDSLSLDAFWEINHQKQFRAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
synX NP_273134.1 polysialic acid capsule biosynthesis protein SynX Not tested IHT-A Protein 9e-80 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lacal_0113 YP_004578394.1 UDP-N-acetyl-D-glucosamine 2-epimerase VFG0254 Protein 4e-80 50