Gene Information

Name : Lacal_1142 (Lacal_1142)
Accession : YP_004579418.1
Strain : Lacinutrix sp. 5H-3-7-4
Genome accession: NC_015638
Putative virulence/resistance : Virulence
Product : phosphonate-transporting ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : 3.6.3.28
Position : 1312716 - 1313453 bp
Length : 738 bp
Strand : -
Note : PFAM: ABC transporter-like; KEGG: cao:Celal_4015 phosphonate-transporting atpase; SMART: ATPase, AAA+ type, core

DNA sequence : 
ATGAGTAAAAAAATAGCCGTAAAAGTAGACGACCTTACAGTAGCTTACAACTACAAACCTGTACTTTGGGATATCGATTT
AGAAATTCCAGAAGGTGTTTTAATGGCTATTGTTGGACCAAATGGCGCAGGAAAATCAACACTTATAAAGTCTATTTTAG
GCATATTAAAACCTATTGCAGGAAGCGTTACTATTTATGGTAAACCTTATGAAAAACAACGCAGACTAGTTGCTTATGTA
CCGCAAAAAGGAAGTGTAGATTGGGACTTCCCAACTACTGCCCTAGATGTTGTAATGATGGGAACTTACGGCAGTTTAGG
TTGGATAAAAAGGCCAAGACAAAAAGAAAAAAAAGCCGCGCTGGAAGCTTTAGAAAAAGTAGGAATGCTAGCCTTTAAAG
GCAGACAAATTAGCCAGCTTTCTGGAGGACAACAACAGCGTATTTTTTTAGCACGCGCTTTAGTGCAAAATGCTTCAATT
TATTTTATGGATGAGCCGTTTCAAGGTGTTGATGCAACAACCGAAATTGCAATTATTAATATTTTAAAAGAATTACGTAA
AGCAGGAAAAACTGTTATTGTTGTACATCACGATTTACAAACTGTACCAGAATATTTTGATTGGGTAACTTTTTTAAATG
TGAAAAAAATTGCCACAGGTCCAGTAAAAGATATATTTAATGATGATAATTTAACCAAAACTTACGGTATAAACTATAAA
GTAAGTATACAAGAGTAA

Protein sequence : 
MSKKIAVKVDDLTVAYNYKPVLWDIDLEIPEGVLMAIVGPNGAGKSTLIKSILGILKPIAGSVTIYGKPYEKQRRLVAYV
PQKGSVDWDFPTTALDVVMMGTYGSLGWIKRPRQKEKKAALEALEKVGMLAFKGRQISQLSGGQQQRIFLARALVQNASI
YFMDEPFQGVDATTEIAIINILKELRKAGKTVIVVHHDLQTVPEYFDWVTFLNVKKIATGPVKDIFNDDNLTKTYGINYK
VSIQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 9e-42 47
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 1e-41 47
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-46 42
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-46 42
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-46 42
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-45 42
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-45 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lacal_1142 YP_004579418.1 phosphonate-transporting ATPase BAC0400 Protein 1e-70 65
Lacal_1142 YP_004579418.1 phosphonate-transporting ATPase BAC0440 Protein 8e-45 44
Lacal_1142 YP_004579418.1 phosphonate-transporting ATPase BAC0350 Protein 6e-47 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lacal_1142 YP_004579418.1 phosphonate-transporting ATPase VFG0526 Protein 6e-47 42