Gene Information

Name : Lacal_1032 (Lacal_1032)
Accession : YP_004579308.1
Strain : Lacinutrix sp. 5H-3-7-4
Genome accession: NC_015638
Putative virulence/resistance : Virulence
Product : UDP-glucose 4-epimerase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : 5.1.3.2
Position : 1199742 - 1200743 bp
Length : 1002 bp
Strand : +
Note : KEGG: fps:FP1297 UDP-N-acetylglucosamine C4 epimerase; PFAM: NAD-dependent epimerase/dehydratase

DNA sequence : 
ATGACGAAATATCATACAAAAAACTTATCTGATTTCACATTTTTAGTAACAGGAGGAGCTGGGTTTATAGGAAGTAATAT
AGTAGATTATCTATTGAAAAATGATGCAAAAAGAGTTGTTATACTAGACAATTTTTCGACTGGTCATCATAAAAATATTA
ATAACCTCATAAAAGATTCTCGTTGTGAATTAATTGAAGGTGATATTAGAGATTTAGAAACTTGCAAAAAAAGTACGATA
GATGTAGATTATGTTTTACATCAAGCCGCTTTAGGCTCTGTACCTCGTTCTATAAACGATCCATTAACCTCAAACGAAGT
TAATGTTTCTGGTTTTCTTAATATGCTTATAGCTGCTAAGGAATCGAAAAGTGTCAAAAGAATGGTTTATGCTGCATCTT
CAAGTACATATGGAGACAGTGAAGGATTACCTAAAGTAGAAGATGTGATTGGAAAACCGTTATCACCTTATGCAGTTACA
AAATATGTGAATGAATTATATGCTGATGTTTTTTATAAAACATACGGTTTAGAAACTATAGGTCTTAGATACTTTAATGT
ATTTGGACCTAAGCAAGATCCAGAAGGTGCTTATGCGGCTGTAATTCCAAAATTTGTTGGACAATTTTTAAATAAAGAAA
ATATTGTTATAAATGGAGATGGAGAACATTCTAGAGATTTTACTTTTATTGAAAATGTAATTCAAGCTAACATTAAAGCA
GCTCTTGCAGAGAAACCTGAGGCTGTAAATCAAGTTTACAATGTAGCATTTGGTGAAAACACAAACTTGAATGAATTGGT
TGATGACATAAAATCAGGATTAAAAAATCTGAATGTAGATTATAGCGCAACAATTGTAAAACATGGTCCAGATAGAGTAG
GAGATGTAAAACATTCTTTAGCAGATATTACTAAAGCAAAAAAATTAATAGATTATAATCCATTATATTCTTTTAAAGAA
GGAATAAAAATAACAACAGAATGGTATTATAATGAATTATAA

Protein sequence : 
MTKYHTKNLSDFTFLVTGGAGFIGSNIVDYLLKNDAKRVVILDNFSTGHHKNINNLIKDSRCELIEGDIRDLETCKKSTI
DVDYVLHQAALGSVPRSINDPLTSNEVNVSGFLNMLIAAKESKSVKRMVYAASSSTYGDSEGLPKVEDVIGKPLSPYAVT
KYVNELYADVFYKTYGLETIGLRYFNVFGPKQDPEGAYAAVIPKFVGQFLNKENIVINGDGEHSRDFTFIENVIQANIKA
ALAEKPEAVNQVYNVAFGENTNLNELVDDIKSGLKNLNVDYSATIVKHGPDRVGDVKHSLADITKAKKLIDYNPLYSFKE
GIKITTEWYYNEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 5e-71 54
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 5e-71 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lacal_1032 YP_004579308.1 UDP-glucose 4-epimerase VFG0430 Protein 2e-71 54