Gene Information

Name : Lacal_1030 (Lacal_1030)
Accession : YP_004579306.1
Strain : Lacinutrix sp. 5H-3-7-4
Genome accession: NC_015638
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 1197374 - 1198648 bp
Length : 1275 bp
Strand : +
Note : KEGG: cat:CA2559_13083 UDP-glucose/GDP-mannose dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-t

DNA sequence : 
ATGAAAAAAAATATTGCTATAATCGGTTTAGGCTATGTAGGATTACCACTAGCTGTAGAATTTGCTAAAAAATACAATGT
TGTAGGTTTCGATATAAACCCAAACAGAGTAGAAGAACTAAATAACGGTCACGACAGTACTTTAGAAGTTAGCGACGAAA
ATTTAAATGCAGTTTTAAACCTGAAAGAAAATCAAATAGGTTTAAAATTAAGTTGCGATGTAAAAGATATTGCAAACTGT
AATGTGTATATAGTTACAGTGCCTACTCCAGTAGATATTAATAACAGACCAGTATTAACACCATTAATTAAAGCCTCAGA
AACCATAGGTGGTATTTTAACTAAGGATGATATAGTAATTTATGAATCTACAGTATATCCTGGTGTAACAGAAGACGAGT
GTGTTCCTGTTTTAGAAAAAACAAGCGGTTTAAAATTTAATCAAGATTTTTATTGTGGCTACTCTCCAGAGCGTATTAAT
CCTGGAGATAAACAACATACAGTAGCTAATATTTTAAAAGTGACTTCAGGATCAACTCCAGAAATAGGTGAAGTAGTAAA
TAACTTATATGCTTCAATAATTACAGCAGGTACACACTTAGCACCAACTATAAAAGTTGCAGAAGCAGCTAAAGTTATAG
AAAATGCACAACGTGATATTAATATTGCTTTTGTTAACGAACTAGCAAAGATTTTCAATAAATTAGATATAGACACACAT
TCGGTATTAGAAGCAGCAGCTACTAAATGGAATTTTTTACCATTTAAACCAGGTTTAGTTGGAGGCCATTGTATTGGTGT
AGACCCATACTATTTAGCTCAAAAAGCTCAAGAAGTTGGGTATCATCCAGAAATTATTTTAGCAGGAAGACGTTTAAATG
ATTCTATGGGTGATTTTGTAGCTACAGAAGTTTTAAAACTTATGGTAACAAAAAATATTGCGGTAAAAAATGCGAAGGTA
TTAATGTTAGGTATTACGTTTAAAGAAAACTGTCCTGATATTAGAAATACTAAAGCTATAGATGTTTATACAGCACTTAC
CAATTTTAATATGAATGTAGATGTTTATGATCCGTGGGCAGATCAAGAAGAGGTTAAAGAAGAATATAACATTTCTACAA
TTCAAACATTAGGAAAAAACTATGATGCAATTGTACACGTAGTATCTCATAAAGAATTTTTAGATTTAGATTTAAATAAT
TTAAAATCTAATAAAGGAATTGTTTATGATGTTAAAGGAAGTTTGAATATTAATGAGGTTACAAAAAGACTATAA

Protein sequence : 
MKKNIAIIGLGYVGLPLAVEFAKKYNVVGFDINPNRVEELNNGHDSTLEVSDENLNAVLNLKENQIGLKLSCDVKDIANC
NVYIVTVPTPVDINNRPVLTPLIKASETIGGILTKDDIVIYESTVYPGVTEDECVPVLEKTSGLKFNQDFYCGYSPERIN
PGDKQHTVANILKVTSGSTPEIGEVVNNLYASIITAGTHLAPTIKVAEAAKVIENAQRDINIAFVNELAKIFNKLDIDTH
SVLEAAATKWNFLPFKPGLVGGHCIGVDPYYLAQKAQEVGYHPEIILAGRRLNDSMGDFVATEVLKLMVTKNIAVKNAKV
LMLGITFKENCPDIRNTKAIDVYTALTNFNMNVDVYDPWADQEEVKEEYNISTIQTLGKNYDAIVHVVSHKEFLDLDLNN
LKSNKGIVYDVKGSLNINEVTKRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-117 57
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-117 57
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 3e-105 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lacal_1030 YP_004579306.1 nucleotide sugar dehydrogenase VFG0431 Protein 5e-118 57