Name : Lacal_1030 (Lacal_1030) Accession : YP_004579306.1 Strain : Lacinutrix sp. 5H-3-7-4 Genome accession: NC_015638 Putative virulence/resistance : Virulence Product : nucleotide sugar dehydrogenase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 1197374 - 1198648 bp Length : 1275 bp Strand : + Note : KEGG: cat:CA2559_13083 UDP-glucose/GDP-mannose dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-t DNA sequence : ATGAAAAAAAATATTGCTATAATCGGTTTAGGCTATGTAGGATTACCACTAGCTGTAGAATTTGCTAAAAAATACAATGT TGTAGGTTTCGATATAAACCCAAACAGAGTAGAAGAACTAAATAACGGTCACGACAGTACTTTAGAAGTTAGCGACGAAA ATTTAAATGCAGTTTTAAACCTGAAAGAAAATCAAATAGGTTTAAAATTAAGTTGCGATGTAAAAGATATTGCAAACTGT AATGTGTATATAGTTACAGTGCCTACTCCAGTAGATATTAATAACAGACCAGTATTAACACCATTAATTAAAGCCTCAGA AACCATAGGTGGTATTTTAACTAAGGATGATATAGTAATTTATGAATCTACAGTATATCCTGGTGTAACAGAAGACGAGT GTGTTCCTGTTTTAGAAAAAACAAGCGGTTTAAAATTTAATCAAGATTTTTATTGTGGCTACTCTCCAGAGCGTATTAAT CCTGGAGATAAACAACATACAGTAGCTAATATTTTAAAAGTGACTTCAGGATCAACTCCAGAAATAGGTGAAGTAGTAAA TAACTTATATGCTTCAATAATTACAGCAGGTACACACTTAGCACCAACTATAAAAGTTGCAGAAGCAGCTAAAGTTATAG AAAATGCACAACGTGATATTAATATTGCTTTTGTTAACGAACTAGCAAAGATTTTCAATAAATTAGATATAGACACACAT TCGGTATTAGAAGCAGCAGCTACTAAATGGAATTTTTTACCATTTAAACCAGGTTTAGTTGGAGGCCATTGTATTGGTGT AGACCCATACTATTTAGCTCAAAAAGCTCAAGAAGTTGGGTATCATCCAGAAATTATTTTAGCAGGAAGACGTTTAAATG ATTCTATGGGTGATTTTGTAGCTACAGAAGTTTTAAAACTTATGGTAACAAAAAATATTGCGGTAAAAAATGCGAAGGTA TTAATGTTAGGTATTACGTTTAAAGAAAACTGTCCTGATATTAGAAATACTAAAGCTATAGATGTTTATACAGCACTTAC CAATTTTAATATGAATGTAGATGTTTATGATCCGTGGGCAGATCAAGAAGAGGTTAAAGAAGAATATAACATTTCTACAA TTCAAACATTAGGAAAAAACTATGATGCAATTGTACACGTAGTATCTCATAAAGAATTTTTAGATTTAGATTTAAATAAT TTAAAATCTAATAAAGGAATTGTTTATGATGTTAAAGGAAGTTTGAATATTAATGAGGTTACAAAAAGACTATAA Protein sequence : MKKNIAIIGLGYVGLPLAVEFAKKYNVVGFDINPNRVEELNNGHDSTLEVSDENLNAVLNLKENQIGLKLSCDVKDIANC NVYIVTVPTPVDINNRPVLTPLIKASETIGGILTKDDIVIYESTVYPGVTEDECVPVLEKTSGLKFNQDFYCGYSPERIN PGDKQHTVANILKVTSGSTPEIGEVVNNLYASIITAGTHLAPTIKVAEAAKVIENAQRDINIAFVNELAKIFNKLDIDTH SVLEAAATKWNFLPFKPGLVGGHCIGVDPYYLAQKAQEVGYHPEIILAGRRLNDSMGDFVATEVLKLMVTKNIAVKNAKV LMLGITFKENCPDIRNTKAIDVYTALTNFNMNVDVYDPWADQEEVKEEYNISTIQTLGKNYDAIVHVVSHKEFLDLDLNN LKSNKGIVYDVKGSLNINEVTKRL |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-117 | 57 |
tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-117 | 57 |
cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-105 | 54 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
Lacal_1030 | YP_004579306.1 | nucleotide sugar dehydrogenase | VFG0431 | Protein | 5e-118 | 57 |