Gene Information

Name : VAA_00084 (VAA_00084)
Accession : YP_004565955.1
Strain :
Genome accession: NC_015633
Putative virulence/resistance : Unknown
Product : Phage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1404218 - 1405453 bp
Length : 1236 bp
Strand : +
Note : -

DNA sequence : 
ATGGCGAATAATCTCACGGCTAGGCAAATCCAAACGGCAAAGCCCAAAGATAAGCTCTATCGCTTATCTGATGGCGGCAA
TCTCTACTTCTGTGTGCGTACAAGCAATTCACGTTCTTGGCAGTTTCGTTATAAACGACCTGGTCAGGACAAAATCACTT
ATCTTTCCTTTGGTACTTATCCAGATATGTCATTGGCAGAAGCGCGAGAGAAAGCGCTAGAGGCTCGAAAGATGCTTGCG
GATGGTATTGATCCTCAGTTGGCCAAAGAAGAGCAAAAAGCCAAAGTTATTGTTGAGCAAAATGCGACGTTCAAGTTTGT
CGCTGAGCAGTGGAAGGCTACGAAAGAAGGGCAGATAAAAGAGAAGACTCTCAATGGTAACTGGCGCAAACTGGAGCTCT
ATGCTTTTCCCAAGCTAGGTACGATACCCGTTAGCAAAATTACGGCGCCTATTGCGATAGCGGCGTTGCGTCCCGTTGAA
ACACAAGGTTTACTAGAAACCGTAAAACGTACCGCCCAACTGATGAACGAGATCATGAACTATGCTGTAAACAGCGGTGT
GATTCATTCTAATCCACTATCTGGTATCCGTGACGTATTCAAGAAGCACAAAGTAGTGCACATGAAAGCGTTACAGCCGC
ATGAAATGCATGAGCTTATACGCACCGTTGCTACAGCGAATATACAGCACGTGACGCGATTTTTAATTGAATGGCAGCTT
CACACGATGGTGCGACCTAATGAAGCCTCTGGTGCTCGTTGGGATGAAATCGACATAGCAAATCGACTATGGATCATCCC
GAAAGAACGAATGAAGATGAACCGCGAGCACCTAGTGCCTCTAACAGACCAAACAATGGCTATTCTTGAAGCGATTAAGC
CTATCAGTGGTCATAGAGAGTTTGTTTTCCCATCCAGTCGCAATCCGAAGGTACCTACCGATTCAGAAACGGCCAATAAA
GCGTTGAGCCGAATGGGATTCAAAGATAGAACTACTGCGCATGGTCTTCGTGCTTTGGCTAGTACCACTCTTAATGAACA
GGGTTTTGAGCCTGATGTCATTGAGGCAGCGCTTGCTCATACTGATAAGAATCAAATACGTAAAGCATACAACCGTACAG
ATTATTTAGATTCACGACGTAGGTTAATGAGCTGGTGGAGTGAGCATATCGAAAAATCGAGCTACGGAAGCTATAGTGTT
GCTGGTGCTGGGTACTTACATTTAATCAAGGCTTAG

Protein sequence : 
MANNLTARQIQTAKPKDKLYRLSDGGNLYFCVRTSNSRSWQFRYKRPGQDKITYLSFGTYPDMSLAEAREKALEARKMLA
DGIDPQLAKEEQKAKVIVEQNATFKFVAEQWKATKEGQIKEKTLNGNWRKLELYAFPKLGTIPVSKITAPIAIAALRPVE
TQGLLETVKRTAQLMNEIMNYAVNSGVIHSNPLSGIRDVFKKHKVVHMKALQPHEMHELIRTVATANIQHVTRFLIEWQL
HTMVRPNEASGARWDEIDIANRLWIIPKERMKMNREHLVPLTDQTMAILEAIKPISGHREFVFPSSRNPKVPTDSETANK
ALSRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKNQIRKAYNRTDYLDSRRRLMSWWSEHIEKSSYGSYSV
AGAGYLHLIKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 7e-175 95
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 6e-174 94
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 6e-174 94
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 6e-100 53
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 6e-100 53
int AAK20773.1 integrase Not tested VPI Protein 4e-100 53
int AAK20803.1 integrase Not tested VPI Protein 4e-100 53
unnamed AAA82714.1 integrase Not tested VPI Protein 4e-100 53
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 2e-91 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAA_00084 YP_004565955.1 Phage integrase VFG1092 Protein 3e-174 94