Gene Information

Name : WANG_1009 (WANG_1009)
Accession : YP_004562806.1
Strain : Lactobacillus kefiranofaciens ZW3
Genome accession: NC_015602
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease, ATP-binding subunit
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1106574 - 1108763 bp
Length : 2190 bp
Strand : +
Note : -

DNA sequence :
ATGTATTTGCTTTGCCAAAATTGTCATAAGCGGCCTGCCTCTATTCATCTTTTTACCAAGGTGAATGGCCAAAGCCGTGA
AATTAGTTTATGTCAACACTGTTATCAAGAATTAAGAAATCAACAAGGAAATCTAGGAAATATGAATAACGATAATAATG
AATTTTTTGGCGACTTTGATGACTTATTCAACGCATTAAACGGAAATAATAACAATGCCGCAAATAATAATATGCGGGGC
GAAGGCCCTAGAATGCAAATGGGTGGTGGTGCCGGCAATGGCGGTCAAGGTGGTAAAAGCCTGCTTGACCAATATGGTAC
CGATTTAACCGCTCTTGCTAAGAAAGGCAAAATTGATCCAGTAATTGGTCGAGATAAAGAAATCGCTCGGGTAATCGAAA
TCTTAAATAGAAGAACTAAAAATAATCCTGTCTTAATCGGTGAAGCCGGTGTCGGTAAAACTGCCGTAGTTGAAGAATTA
GCACAAGAAATTGTTGATGGTTCTGTCCCAGCAAAATTACAAGATAAGAAAATTATTTCATTAAATGTCGTATCACTTGT
TCAAGGTACGGGAATCCGTGGTCAATTTGAACAGAGAATGGAGCAATTAATCAAGGAATTGCAACAACGCGATGATATCA
TCCTCTTCATTGATGAAATTCATGAAATTGTCGGTGCTGGGAACGCAGAAGGTGGTATGGACGCAGGCAATATCATTAAA
CCCGCTTTGGCCCGTGGTGAATTGCAATTAGTCGGTGCAACCACGATTAAAGAATACCGTGATATTGAAAAAGATTCTGC
TTTAGCACGGAGATTCCAACCTGTTGAAGTTAAAGAACCTTCCATTGATGAAACAATTAAGATTCTAAAAGGTATTCAAA
AGCGCTACGAAGATTATCACCACGTTCGTTACACTGATGAAGCAATCGAATCAGCTGCAAAATTATCTTCGCGCTACATT
CAAGACAGATTCTTGCCTGATAAAGCCATTGACTTACTTGATGAAGCTGGCTCTAGAATGAACTTAACCATCCCTTATAT
TGATAAGGATAAAGTTCAAGAAAGAATTAACGCTGCTGAGCAACTTAAAGAAGAAGCATTAAAGAGTGAAGATTATGAAA
AAGCTGCCTACTACCGTGATCAAATTGAAAAATACGAAAAGATGAAGGATCAAAAAGTTGACCCTGATAAATCTCCGATT
ATTACCAATAAGGTCATGAATAAGATCGTGGAAGAAAAAACTGGCATCCCTGTAGGCGATATCCAAAAACAAGAGGAAAA
TCAGTTGCAGAATTTGGCTACTGATTTAAAGGCGCATGTAATTGGACAAGATAAGGCAGTTGAAAAAGTTGCCCGTGCCA
TTCGTCGTAACAGAATTGGTTTCAACAAGTCTGGCCGACCAATTGGCTCTTTCCTCTTTGTTGGTCCAACTGGTGTCGGT
AAGACGGAATTAGCTAAGCAATTGGCTAAGCAAATGTTTGGCTCAGAGAATGCCATGATTCGATTTGATATGTCTGAATA
CATGGAACAATACTCAGTTTCCAAGTTAATCGGCTCCGCACCTGGTTATGTTGGCTATGAAGAAGCTGGTCAATTAACTG
AACAAGTTCGTCATAACCCATACAGCTTAATTTTGCTTGACGAAATTGAAAAAGCTCACCCAGATGTATTAAATCTCTTC
TTGCAAATCCTAGATGATGGTCGTTTAACTGACTCTCAAGGCAGAACAGTTTCCTTCAAGGATACGATTATTATCATGAC
TTCTAATGCAGGGCAAGGCATCAAGAATGCTAGTGTCGGTTTTGCGGCAGAAAACGAACAAGAAGACAAAGAATCTGCTA
GAAAAGATATGTCTCAATTCTTTAAGCCAGAATTCTTAAATCGTCTAGATGATGTCATTGAGTTCAACGAATTAACTAAG
CCAGATTTACTTAAGATTGTTGATTTAATGCTTAAAAACACTAATGACATGGTCAAAGACCAAGGCTTACACATTGCTGT
CACTGACGCAGCTAAGGAAAAGCTAGTTGAAGAGGGCTTTAACCCTGCATTAGGTGCTCGTCCACTTCGCAGAACTATTC
AAGAAGAAATTGAAGATAAAGTAGCTGATTTTAAACTCGATCATACCGACAGCAAGAACCTAAAAGCTGACGTTCAAGAT
GGCGAAATTGTAATTAGTGAAAATAACTAA

Protein sequence :
MYLLCQNCHKRPASIHLFTKVNGQSREISLCQHCYQELRNQQGNLGNMNNDNNEFFGDFDDLFNALNGNNNNAANNNMRG
EGPRMQMGGGAGNGGQGGKSLLDQYGTDLTALAKKGKIDPVIGRDKEIARVIEILNRRTKNNPVLIGEAGVGKTAVVEEL
AQEIVDGSVPAKLQDKKIISLNVVSLVQGTGIRGQFEQRMEQLIKELQQRDDIILFIDEIHEIVGAGNAEGGMDAGNIIK
PALARGELQLVGATTIKEYRDIEKDSALARRFQPVEVKEPSIDETIKILKGIQKRYEDYHHVRYTDEAIESAAKLSSRYI
QDRFLPDKAIDLLDEAGSRMNLTIPYIDKDKVQERINAAEQLKEEALKSEDYEKAAYYRDQIEKYEKMKDQKVDPDKSPI
ITNKVMNKIVEEKTGIPVGDIQKQEENQLQNLATDLKAHVIGQDKAVEKVARAIRRNRIGFNKSGRPIGSFLFVGPTGVG
KTELAKQLAKQMFGSENAMIRFDMSEYMEQYSVSKLIGSAPGYVGYEEAGQLTEQVRHNPYSLILLDEIEKAHPDVLNLF
LQILDDGRLTDSQGRTVSFKDTIIIMTSNAGQGIKNASVGFAAENEQEDKESARKDMSQFFKPEFLNRLDDVIEFNELTK
PDLLKIVDLMLKNTNDMVKDQGLHIAVTDAAKEKLVEEGFNPALGARPLRRTIQEEIEDKVADFKLDHTDSKNLKADVQD
GEIVISENN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 1e-153 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
WANG_1009 YP_004562806.1 ATP-dependent Clp protease, ATP-binding subunit VFG0080 Protein 0.0 62
WANG_1009 YP_004562806.1 ATP-dependent Clp protease, ATP-binding subunit VFG0079 Protein 2e-156 51