Gene Information

Name : Sinme_6627 (Sinme_6627)
Accession : YP_004557779.1
Strain :
Genome accession: NC_015597
Putative virulence/resistance : Virulence
Product : RNA-directed DNA polymerase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3344
EC number : -
Position : 8960 - 9952 bp
Length : 993 bp
Strand : +
Note : PFAM: Reverse transcriptase; KEGG: rhi:NGR_b07990 putative reverse transcriptase/maturase

DNA sequence : 
ATGACTTCGGAAAGTACGACAGACAAGCCGTTTCGAATTGAGAAACGTCGAGTGTACGAAGCTTACAAAGCGGTCAAAGC
CAACCGTGGCGCGGCCGGGGTGGACGGGCAGACGCTGGAGATATTTGAGAAAGACCTTGCAGCAAACCTCTACAAGATCT
GGAATCGAATGTCCTCGGGAACCTACTTTCCGCCGCCGGTGCGCGCCGTCTCCATTCCGAAGAAGGCTGGAGGCGAAAGG
GTTTTGGGTGTGCCCACGGTCAGCGATCGGATCGCGCACATGGTGGTCAAGCAGATGATCGAGCCGGATTTGGACTCCCT
CTTTCTTCCAGACTCCTACGGTTACAGGCCGGGAAAATCGGCCCTGGATGCCGTCGGAGTGACGCGTCAGCGATGCTGGA
AGTACGATTGGGTTTTGGAATTCGACATCAAAGGGCTGTTTGACAATCTTCCGCATGATCTCTTGCTGAAGGCGGTCAGA
AAAGACGTCAAATGCAACTGGGCTCTGCTCTACATCGAAAGATGGCTGACTGCGCCTATGGAAAAGAACGGAGAAGTCAT
CGAGCGGTCACGCGGTACCCCACAGGGAGGCGTGGTTAGCCCGATCTTGTCGAATCTCTTTCTGCACTATGCATTTGATC
TCTGGATGACGCGGACGCATCCCGACCTTCCATGGTGTCGATATGCCGACGATGGTCTTGTTCACTGCCAGAGCGAGCAA
CAAGCCGAAGTCCTCAAGGTGGAGCTGAGTTCTCGGCTGGCAGCGTGCGGACTTCAAATGCATCCGACAAAGACCAAGAT
TATCTACTCCAAGGATCAACGGCGCAGGGAGGCGTATCCGAATGTCACGTTCGACTTTCTCGGGTATCAGTTCCGGCCGC
GACGGGTGGCGAACACACAGCGGGACGAGTTCTTCTGTGGCTACACGCCTGCGGTCAGTCCGACGGCGCTCAAGTCGTTG
CGGGCAACGATCTGCGAGAGGCCCGGCTGGTGA

Protein sequence : 
MTSESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTYFPPPVRAVSIPKKAGGER
VLGVPTVSDRIAHMVVKQMIEPDLDSLFLPDSYGYRPGKSALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVR
KDVKCNWALLYIERWLTAPMEKNGEVIERSRGTPQGGVVSPILSNLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQ
QAEVLKVELSSRLAACGLQMHPTKTKIIYSKDQRRREAYPNVTFDFLGYQFRPRRVANTQRDEFFCGYTPAVSPTALKSL
RATICERPGW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13526.1 reverse transcriptase Not tested PAGI-7 Protein 4e-99 59
unnamed CAD33771.1 putative reverse transcriptase Not tested PAI I 536 Protein 3e-73 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinme_6627 YP_004557779.1 RNA-directed DNA polymerase VFG1512 Protein 2e-73 50