Gene Information

Name : Sinme_4611 (Sinme_4611)
Accession : YP_004557158.1
Strain :
Genome accession: NC_015596
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 951678 - 952991 bp
Length : 1314 bp
Strand : +
Note : KEGG: smd:Smed_4966 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit

DNA sequence : 
ATGACCCTATTCCATCTGGCCGGCCCCTCGCTTCTCGTCGTCGTCCTGTTTCTGCTGTCGACGCCGATCACCTGGGCCAT
GGCGATCGGAGCGTTCGCCTTCTTCCTCATCAATATGGACATGATCCCGCTCGCCAATTTCGCGCAGGAAATGGCTGAAG
GCAGTCAATCCGTGTCCTTGTTGGCGCTGCCGCTGTTCGTTCTTGCCGGCTGCATCATGAACGCCTCGGGCATCACGCGG
CGTCTATTGGCGCTTGCGGACGTGCTCGTCGGCCACATGACGGGCGCGCTGGCGCAGATGTGCACCGTGCTCGGCACCTT
GCTCGGCGGACTTACCGCATCTGCCAATGCCGATGCGGCGATGCTCGCCAAGACGCTCGGCGTCGAGATGTCGCAACGGG
GCTACAGCCGGGCCTTCGCCGCGGTCATCACATCGTCGGCGGCCATCATCACGAGCCTCATTCCGCCGTCGATCGGCCTT
ATCGTCTATGGTTTTCTGGCGGAGACGTCCATCGGCCGGCTCTTCGCAGCGGGTGTCATACCTGGCCTCGTGCTGGCGAC
CGGGCTCATGGTCACCACCTATTTCATCGCCCGCAAGCGTGGTTACAAGCCGTTGCGCAAGGAGCGTGCCACCCGCGCAG
AGGGCGTCCGGGCGCTGATCGACGGGCTCTGGGCGCTGTCGATCCCGGTGGTGATCTTCGCCGGTACGCGATACGGTCTT
TTCACCACCACCGAAGCCGGTGCGGTGGTGGTCGTCTACGTGCTCTTCGTCGCCGTGTTCGGCTACCGCGAATTCACCTT
CCGCCAGATCCCGGAGGTTCTTGCCGAGGCCGTGCGCGATTCGGCCGTGGTCATGATCATGATCTGCGCGGCGGCAGCCT
TCGGTTTCTATCTCGCCTGGGAGCAGGTGCCGCAGGCCATGTCCGGCTGGCTCGGCGAAGCCACCGACAATCCGCTCCTG
ATGCTGCTCCTCATCAACGTCCTGCTGATCGTCATCGGCACGGCGATCGAGGGGTCGGCGGCGCTGATCATCCTGACGCC
GATGCTGATCCCGATCATCGACGGCGTGGGCATCGATCGCGTGCATTTCGGCGTCGTCTTCATCACGAACCTGACCATCG
CCGGCATCACGCCGCCGGTCGGGGGATTGATGTACATCTCGTCCATGGTGCTGAAAGTGCCGATGATGGCCTATGCCCGC
GAGGTGCTGCCTTACCTGGCGATGATGATGGTCATTCTCGTCATGCTGAGCATGTTCCCGCAGCTGTCGCTTTGGCTGCC
GAACCTGGTCTATGGGACGACGGCGGTCCAATAG

Protein sequence : 
MTLFHLAGPSLLVVVLFLLSTPITWAMAIGAFAFFLINMDMIPLANFAQEMAEGSQSVSLLALPLFVLAGCIMNASGITR
RLLALADVLVGHMTGALAQMCTVLGTLLGGLTASANADAAMLAKTLGVEMSQRGYSRAFAAVITSSAAIITSLIPPSIGL
IVYGFLAETSIGRLFAAGVIPGLVLATGLMVTTYFIARKRGYKPLRKERATRAEGVRALIDGLWALSIPVVIFAGTRYGL
FTTTEAGAVVVVYVLFVAVFGYREFTFRQIPEVLAEAVRDSAVVMIMICAAAAFGFYLAWEQVPQAMSGWLGEATDNPLL
MLLLINVLLIVIGTAIEGSAALIILTPMLIPIIDGVGIDRVHFGVVFITNLTIAGITPPVGGLMYISSMVLKVPMMAYAR
EVLPYLAMMMVILVMLSMFPQLSLWLPNLVYGTTAVQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 3e-40 42
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 3e-40 42
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 2e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinme_4611 YP_004557158.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 1e-40 42