Gene Information

Name : Sinme_3875 (Sinme_3875)
Accession : YP_004556456.1
Strain :
Genome accession: NC_015596
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 191923 - 193203 bp
Length : 1281 bp
Strand : -
Note : KEGG: smd:Smed_3834 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit

DNA sequence : 
ATGGCGACGCTCTTCGGGGGATGGTTTGCCCTTCTGATCGCCGGCATGCCGGTTGGATTCACGCTGATCGTGGCTGCGCT
CGCCTACATGCTCTGGCAGGGGACGGGCCTGAACTTTGCCGGCCAGCGCATGATCGCCGGCCTCAACAGCTTTCCGCTGC
TTGCGGTCCCCTTTTTCATCCTCACCGCACAATTGATGAATCTCTCGGGCGTGACCGAGCGCATTTTCGACTTCGCCAAG
GCGCTTGTCGGCCATATCAGGGGCGGGCTCGGCCATGTGAACATCATGGCGAGCGTGCTGTTTTCCGGCATGTCCGGCTC
GGCCGTCGCCGATGCCGCCGGCCTTGGTCAGCTTGAGATCAAGGCCATGCGCGACGCCGGCTATGACGAGCAGTTTTCCG
GGTCGATCACCGCCGCATCGGCCATCATAGGCCCGCTCATCCCGCCCTCCATTCCCCTCGTGGTCTACGGCGTGATCGCC
AATACCTCGATCGGGGGCCTTTTTCTCGGCGGGATCGTGCCCGGCCTCCTCTGCGCGGCCTCGCTCATGATCATGGTCTA
CGTGATCGCCTGGCGCCGCAACTATGCGACCGCGCAGCGCGCCGGCTTTCGCCGGGTGTGGTCCACCTTCTGGCACGCGC
TGCTTCCGCTCATCACGCCCTTCATCATCATCGGCGGCATCTTTGCAGGGGTGTTCTCGCCGACCGAGGCTGCCGTGGTC
GCGGCCAGCTATGCGCTCTTCCTCGGTGTCGTCGTCTACCGTGAAATCACCTTCGCCAAACTTGTGACCGTACTGCGTGA
GACTGTCAGCCATACGGCCGCCGTCGGCCTTCTCATCATGGGCGTGTCGCTATTCGGCTATGTGATCGCGCGGGAGCAGG
TACCCCAGCACGTCGCCACGTTCTTCCTCACTTATGCGGACGATCCGCTGACATTCCTGGTCCTCGTCAATCTCATGCTG
CTTGCGCTCGGGACCTTTATCGAGGCCCTGGCAATCCTGCTGCTCATCGTACCGGTGCTGGTCCCGACCGCGCTCCAATT
CGGGGTGGATCCCGTCCACTTCGGTGTCATGGTCGTGTTCAACCTGATGATCGGCATTTTGACGCCGCCGATGGGCGTGG
CGCTCTTCGTCGTATCCAAGGTCGCCGACATTCCCTTTGGCGTGCTCGCACGCGGTATCCTGCCTCTTCTCATTCCGCTC
ATCGTCGTCCTGGTGCTGATCACCATCTTTCCGGCGCTCGTCACCTTCATCCCCGACCAGATGCTCGGAGCCGCCCGATG
A

Protein sequence : 
MATLFGGWFALLIAGMPVGFTLIVAALAYMLWQGTGLNFAGQRMIAGLNSFPLLAVPFFILTAQLMNLSGVTERIFDFAK
ALVGHIRGGLGHVNIMASVLFSGMSGSAVADAAGLGQLEIKAMRDAGYDEQFSGSITAASAIIGPLIPPSIPLVVYGVIA
NTSIGGLFLGGIVPGLLCAASLMIMVYVIAWRRNYATAQRAGFRRVWSTFWHALLPLITPFIIIGGIFAGVFSPTEAAVV
AASYALFLGVVVYREITFAKLVTVLRETVSHTAAVGLLIMGVSLFGYVIAREQVPQHVATFFLTYADDPLTFLVLVNLML
LALGTFIEALAILLLIVPVLVPTALQFGVDPVHFGVMVVFNLMIGILTPPMGVALFVVSKVADIPFGVLARGILPLLIPL
IVVLVLITIFPALVTFIPDQMLGAAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 2e-92 62
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 3e-92 62
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 3e-92 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinme_3875 YP_004556456.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 1e-92 62