Gene Information

Name : Sinme_5123 (Sinme_5123)
Accession : YP_004557638.1
Strain :
Genome accession: NC_015596
Putative virulence/resistance : Virulence
Product : capsular-polysaccharide-transporting ATPase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 1517300 - 1517959 bp
Length : 660 bp
Strand : +
Note : KEGG: smd:Smed_4995 ABC transporter related; SMART: ATPase, AAA+ type, core

DNA sequence : 
ATGATCCGGTTCGAGCAGGCGACGAAATATGCCCGCACCAAGGGCATCAAGAAACCAATCATCGAGGACGCATCACTGAC
GCTGAACCGCGGCAAGAGCGTCGGCCTTCTCGGCCGCAACGGCGCCGGAAAATCGACGCTGCTGCGCCTGATCGCCGGCG
CCATCAAGCTCGACAAGGGCCGAATCATCCGCCGCGGCAAGATCTCCTGGCCGCTCGGCTTTGCCGGCAGCTTTCAAAAC
TCAATGACGGCCGAGCAGAATGTGCGCTTCGTAGCCCGAATCTACGGCGTCGATACAGAGCAACTGATCGGCTATGTGGA
GGATTTCGCCGAACTCGGCCCCTTTTTCAAGGCGCCGGTCGGCACCTACTCGTCCGGCATGAAGGCGCGCCTCGCGTTCG
GCTTGAGCATGGGAGTCAACTTCGACTACTATCTCGTCGACGAAATCACCGCGGTCGGTGACTCAAATTTTAAGAAAAAG
TGTCAGGCTGCCTTCGAGACCAAGCTGCGGGATTCCGACATTATCATGGTCTCCCACAGCACCGGTACGATCCGCGACTA
TTGCGATTGCGGCGTGGTGCTGGAAAAAGGCAAGATGATCTATTATGAGGATGTCGAAGCCGCGATCCGCGCGCACGACA
AGAATATGAAGGAAAGCTAA

Protein sequence : 
MIRFEQATKYARTKGIKKPIIEDASLTLNRGKSVGLLGRNGAGKSTLLRLIAGAIKLDKGRIIRRGKISWPLGFAGSFQN
SMTAEQNVRFVARIYGVDTEQLIGYVEDFAELGPFFKAPVGTYSSGMKARLAFGLSMGVNFDYYLVDEITAVGDSNFKKK
CQAAFETKLRDSDIIMVSHSTGTIRDYCDCGVVLEKGKMIYYEDVEAAIRAHDKNMKES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 1e-46 49
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 2e-46 49
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 1e-48 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinme_5123 YP_004557638.1 capsular-polysaccharide-transporting ATPase VFG0258 Protein 4e-47 49
Sinme_5123 YP_004557638.1 capsular-polysaccharide-transporting ATPase VFG1449 Protein 5e-49 48
Sinme_5123 YP_004557638.1 capsular-polysaccharide-transporting ATPase VFG0696 Protein 1e-46 46
Sinme_5123 YP_004557638.1 capsular-polysaccharide-transporting ATPase VFG2563 Protein 4e-45 43