Gene Information

Name : Sinme_4781 (Sinme_4781)
Accession : YP_004557323.1
Strain :
Genome accession: NC_015596
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 1148296 - 1149579 bp
Length : 1284 bp
Strand : +
Note : KEGG: smd:Smed_4746 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit

DNA sequence : 
ATGGACATGATGATCCTCTTCGGCGTGTTCACGCTGCTGATGTTGATCGGCACGCCGATCGCCTTCTGCCTCGGCGTCGC
GTCCTTCGCGACGGTTCTTTATCTGGGGCTGCCGCCGCTGGTGATCTTTCAGCGGCTCAATTCCGGCATGAGCGTGTTTT
CGCTGCTTGCCATTCCCTTCTTCATCTATGCCGGCGATCTGATGGTGCGTGGCGGGATCGCCCAGAAGATCGTCGCCTTC
GCGGCTTCACTGGTCGGGCACATCCGGGGCGGGCTCGGTCAGGTCAACATCGTCACCGCAACGCTGTTCGGCGGCATTTC
CGGCTCGGCCGTGGCGGAAGCGGCCGCTGTAGGCGGGCTCATGATCCCGCAGATGAAACAGCGCGGTTACGGCGCGGACT
ACGCCGTCAACGTTACCTCGATGGCGGCCTTGATCGCGCTGATGCTGCCGCCTTCGCACAACATGATCATCTACTCGATC
TCGGCAGGCGGAAAGATCTCGATCGCAGATCTCTTCACCGCCGGCATCCTTCCCGGCCTCCTTTACGCTGCCGCACTGAT
GGCCACCGCCTATTTCGTTGCGCGCCGGCGCGGCTATCCGACCGAGGTCTTCCCCGGGTTCGCCAGGGTCGGGCGCTACC
TGCTGATTTCGACGCCCGGCCTCCTGCTCATCGGCATCATCTTCGGGGGCGTACGTTCGGGTGTGTTCACCGCGACCGAG
AGTTCCTGCATCGCCGTTCTCTATGCGCTTGCGGTGACCGTCTTCGTCTATCGGCAGATGACCTGGCAGGACTTCGTCCA
GGCAACCTTCGCGGCCGTGCGCACGACGGCCATGGTCCTGCTCATCATCGGCATGGCGGCCGCCTTCTCCTGGTTGATGG
CGTTCCTGAGAGTGCCCGCAGCGCTGATCGACTGGATGAACACGATCTCGGAAAATCCGATCATCATACTCCTATTGCTC
AACGTTCTGATGTTGTTCCTCGGCACCTTCATGGACATGGGCCCGACCATCATCATCTGCACCCCGATCTTCCTGCCGGT
CGCCATGGCCTACGGCGTCGACCCGGTCCATTTCGGCGTCATCATGATCCTAAACTTCGGCATCGGACTCAACACGCCGC
CTGTGGGCGCCGTGCAGTTCGTCGCCTGTGCAGTCGGGAAGATCTCCGTCTGGGAGGCGATGCGCAGCATATGGCCGTTC
TACCTGGCCGGGTTGATCGTCCTCGGGCTCGTCACCTATGTTCCGGCCCTTTCTCTATGGCTGCCGGCCGTCTTCAAAGG
GTGA

Protein sequence : 
MDMMILFGVFTLLMLIGTPIAFCLGVASFATVLYLGLPPLVIFQRLNSGMSVFSLLAIPFFIYAGDLMVRGGIAQKIVAF
AASLVGHIRGGLGQVNIVTATLFGGISGSAVAEAAAVGGLMIPQMKQRGYGADYAVNVTSMAALIALMLPPSHNMIIYSI
SAGGKISIADLFTAGILPGLLYAAALMATAYFVARRRGYPTEVFPGFARVGRYLLISTPGLLLIGIIFGGVRSGVFTATE
SSCIAVLYALAVTVFVYRQMTWQDFVQATFAAVRTTAMVLLIIGMAAAFSWLMAFLRVPAALIDWMNTISENPIIILLLL
NVLMLFLGTFMDMGPTIIICTPIFLPVAMAYGVDPVHFGVIMILNFGIGLNTPPVGAVQFVACAVGKISVWEAMRSIWPF
YLAGLIVLGLVTYVPALSLWLPAVFKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 1e-41 41
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 2e-41 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 2e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinme_4781 YP_004557323.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 8e-42 41