Gene Information

Name : Sphch_4188 (Sphch_4188)
Accession : YP_004556272.1
Strain :
Genome accession: NC_015595
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, LuxR family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG4566
EC number : -
Position : 113740 - 114363 bp
Length : 624 bp
Strand : +
Note : KEGG: sjp:SJA_C1-04940 response regulator UhpA; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-termin

DNA sequence : 
ATGGGGGATAGACGCGTCATCCATCTGGTCGACGACGAGGAGAGCATCCGCAAGGCGGCGAGCTTTGCGCTCAAGACCGC
GGGCTACGACGTCGTGACCTATGCCTCGGGCGTGGAGTTTCTCAAGGAGGCGAAGTCGGCGGCCGTCGGCTGCGTCATCC
TTGACGTGCGCATGCCCGAGATGGACGGTCTCGAGGTTCAGGCCGCCATGGCAGCACGCGGGGTCAACATGCCGGTCATC
GTCCTGACCGGCCATGGCGACGTGTCGGTTGCGGTGCAGGCCATGAAAGGCGGCGCGGTCGACTTTCTCGAGAAGCCCTT
CGAGAAAGCGGCCCTGCTCGGCGCCGTCAGCCGCGCGTTCGCGCGTCTCGACGATGTCGACTTTCGCACTCTGGAAACCT
CTGAAGCCGGCGTGCGGGTCGCTGCACTGACGCCCCGGGAGCGTGAAGTGCTGGAAGGGCTGGCGAACGGCCTGCCCAAT
AAGACGATCGCCTATGACCTGGGCTGTTCATCGCGAACGGTCGAGGTCCATCGCGCGAGCCTGATGGCCAAGCTCGAGGT
CCGCAATTTGTCCGAAGCCCTGCGGATCGCCTTTGCCGCGGGCATGGGCCGCAAGCCGAAGTGA

Protein sequence : 
MGDRRVIHLVDDEESIRKAASFALKTAGYDVVTYASGVEFLKEAKSAAVGCVILDVRMPEMDGLEVQAAMAARGVNMPVI
VLTGHGDVSVAVQAMKGGAVDFLEKPFEKAALLGAVSRAFARLDDVDFRTLETSEAGVRVAALTPREREVLEGLANGLPN
KTIAYDLGCSSRTVEVHRASLMAKLEVRNLSEALRIAFAAGMGRKPK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrR YP_216395.1 tetrathionate reductase complex: response regulator Virulence SPI-2 Protein 7e-28 42
ttrR NP_456141.1 putative two-component response regulator Not tested SPI-2 Protein 7e-28 42
ttrR NP_805058.1 two-component response regulator Virulence SPI-2 Protein 7e-28 42
ttrR CAB37412.1 TtrR Virulence SPI-2 Protein 5e-28 42
ttrR NP_460352.2 response regulator Virulence SPI-2 Protein 7e-28 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sphch_4188 YP_004556272.1 two component transcriptional regulator, LuxR family VFG0488 Protein 2e-28 42