Gene Information

Name : Sphch_2688 (Sphch_2688)
Accession : YP_004554837.1
Strain :
Genome accession: NC_015593
Putative virulence/resistance : Virulence
Product : capsular-polysaccharide-transporting ATPase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : 3.6.3.38
Position : 2854545 - 2855270 bp
Length : 726 bp
Strand : +
Note : PFAM: ABC transporter-like; KEGG: swi:Swit_3493 ABC transporter related; SMART: ATPase, AAA+ type, core

DNA sequence : 
ATGGATCTTCAGAACAGCCAAATCGAGTGTCGGCCGGATGGCAAGGAACGCGTCGGTCGTCAGAGGATCGTTTTCCAGAA
CGTATCGAAGGTCTATCGGCGCCATCATTTTACCCGCACGGTGTTCACTGATTTGAATTTTGAAATTAACCAAGGGGATA
GTATTGGCATCTGCGGCGCCAATGGCGCTGGGAAATCGACCCTCATGCGGTTGATCGGCGGTGTGGAGTATCCCACTTCT
GGTAAAATCCACAAGACGATGACGACGTCATGGCCGATAGGCTATGGTGCGAGCTTTGATCGCAATTTAACCGGCGCGGA
CAATGCCCGGTTCATTGCGCGCATTTATCAATATGACCCGCAGGCCATGCTTGACTATGTGGAGGATTTTGCACAATTGG
GTGCCTATCTTCATCAGCCGGTATCAACTTACTCTGCCGGCATGACGGCACGTCTCGCCTTTGGCTGCTCTCTTGCGATA
CGGTTTGACTGCTATCTGATCGATGAAGTGACCGCCGCGGGTGATGCCCGCTTTCGCCAGAAGAGCGAAGATGCACTGAG
GGAGCGGCGGGCGACGGGAACGCTAATCATGATCTCTCATGATCCATACACGCTTCAGAGTTATTGCACTCGAGGTGCTG
TGCTCTATGGAGGTAGCCTGACCTTCTACGACAGCGTCGAGGAAGCGTGCGAGGTTCATAACGCTCTACAAATGAGAGTT
GTGTGA

Protein sequence : 
MDLQNSQIECRPDGKERVGRQRIVFQNVSKVYRRHHFTRTVFTDLNFEINQGDSIGICGANGAGKSTLMRLIGGVEYPTS
GKIHKTMTTSWPIGYGASFDRNLTGADNARFIARIYQYDPQAMLDYVEDFAQLGAYLHQPVSTYSAGMTARLAFGCSLAI
RFDCYLIDEVTAAGDARFRQKSEDALRERRATGTLIMISHDPYTLQSYCTRGAVLYGGSLTFYDSVEEACEVHNALQMRV
V

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 1e-44 48
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 2e-39 44
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 4e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sphch_2688 YP_004554837.1 capsular-polysaccharide-transporting ATPase VFG0258 Protein 6e-45 48
Sphch_2688 YP_004554837.1 capsular-polysaccharide-transporting ATPase VFG2563 Protein 8e-48 47
Sphch_2688 YP_004554837.1 capsular-polysaccharide-transporting ATPase VFG0696 Protein 2e-46 47
Sphch_2688 YP_004554837.1 capsular-polysaccharide-transporting ATPase VFG1449 Protein 1e-39 44