Gene Information

Name : Sphch_1959 (Sphch_1959)
Accession : YP_004554142.1
Strain :
Genome accession: NC_015593
Putative virulence/resistance : Unknown
Product : transposase IS3/IS911 family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 2081379 - 2081786 bp
Length : 408 bp
Strand : +
Note : PFAM: Transposase IS3/IS911; KEGG: sme:SM_b20918 transposase of insertion sequence ISRm1 orfA protein

DNA sequence :
ATGCATATGCCTGACCGTATGACTGGAACCTATGATCGCGTGGAGGTGATCACCTCGGTGCAGCGCCGACGGCGTTGGAC
GCCAGAGGAGAAGATCCGGATCGTTGAAGAGACCTACCTGCCGGGCAACACGGTATCGCTGGTAGCCCGTCGGCATGGCA
TTGCCGGCAATCAGTTGTTCACCTGGCGCCGGCTGATGGCCCAGGGCGCGCTCACCGCCGCCACGGCGGGTGAGGAGGTC
GTGCCCGCGTCCGATTACCGCGCTATGGAAGCACAGGTGCGTGAGCTTCAGCGCCTGCTTGGCAAGAAGACGATGGAAAA
TGAACTGCTGCGAGAGGCTGTCTCCCGGGCCGCAGGCCCAAAAAAACGGCTGTTGCGCTCGACCTCGTGGCCAGAGGGTG
GACAGTGA

Protein sequence :
MHMPDRMTGTYDRVEVITSVQRRRRWTPEEKIRIVEETYLPGNTVSLVARRHGIAGNQLFTWRRLMAQGALTAATAGEEV
VPASDYRAMEAQVRELQRLLGKKTMENELLREAVSRAAGPKKRLLRSTSWPEGGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpG AAD44740.1 TnpG Not tested SHI-2 Protein 6e-25 60
unnamed AAL57520.1 IS2 transposase Not tested LEE Protein 6e-25 60
st02 CAC81840.1 ST02 protein Not tested LEE II Protein 6e-25 60
ECO26_5247 YP_003232129.1 insertion sequence 2 OrfA protein Not tested LEE Protein 9e-25 60
S3188 NP_838471.2 insertion sequence 2 OrfA protein Not tested SHI-1 Protein 9e-25 60
S4060 NP_839229.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 9e-25 60
S4049 NP_839217.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 3e-24 59
aec50 AAW51733.1 Aec50 Not tested AGI-3 Protein 7e-25 56
SF2984 NP_708758.3 IS2 ORF1 Not tested SHI-1 Protein 5e-25 56
SF3709 NP_709448.3 IS2 ORF1 Not tested SHI-2 Protein 1e-24 56
SF3722 NP_709461.3 IS2 ORF1 Not tested SHI-2 Protein 1e-24 56
insC YP_002414034.1 IS2 insertion element repressor InsA; KpLE2 phage-like element Not tested Not named Protein 4e-20 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sphch_1959 YP_004554142.1 transposase IS3/IS911 family protein VFG0609 Protein 4e-25 56
Sphch_1959 YP_004554142.1 transposase IS3/IS911 family protein VFG0648 Protein 1e-25 56
Sphch_1959 YP_004554142.1 transposase IS3/IS911 family protein VFG0622 Protein 4e-25 56
Sphch_1959 YP_004554142.1 transposase IS3/IS911 family protein VFG1733 Protein 1e-20 52