Gene Information

Name : Sphch_1855 (Sphch_1855)
Accession : YP_004554045.1
Strain :
Genome accession: NC_015593
Putative virulence/resistance : Virulence
Product : betaine-aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.1.8
Position : 1966567 - 1968057 bp
Length : 1491 bp
Strand : +
Note : KEGG: aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase

DNA sequence :
GTGAAGACATTGAATGATTGGAGCGAACTGGCAAAGGGTGTCCGCTTTCCGCGCGCGCTCCACATCGACGGCAAGTCAGT
TATGGCCATCGGTGGAGCAACGCTGTCGAAGATCAATCCGGCCACCGGCGATATCCTGGCCGACGTCGCGATGGGCGACG
GCGGCGATGTCGATCTGGCGGTGTCCGCCGCGCGCCGTGCCTTCGAGGATGGCCGATGGTCGTGCAAATCGCCTGGAGAA
CGCCGGCAGATATTGCTGAAGCTGGCGCAACTGATCGAAGGCGATGCCGAAAATCTGGCGTTGCTGGAAAGTCTCGACAT
GGGAAAGCCCGTGGCAGAGGCACTGGCGATCGATATCCCCGGCGCTGCGGCGGTGTGGCGCTTCTATGCGGAAGCGATCG
ACAAGCTTTATGACGAAGTGGCGCCTGCCGCGCGCGGGAATCTCGCCATGATACGGCGTGTTCCTTTAGGCGTTGTGGCC
GCCATTGTGCCATGGAACTTCCCATTCGACATGGCGGCGTGGAAGTGTGCGCCTGCATTGGCCGCAGGCAATTCGGTCGT
GCTCAAGCCTTCGGAGCGCTCGCCCTTCACCGCGCTTCGCCTCGCTGAACTCGCTATGGAGGCCGGAATCCCGGACGGCG
TGCTGAACGTGGTCACCGGGCTGGGGAGCACTGCGGGCCAGGCACTGGGCCTTCACAGCGATGTCGACTGCCTAGCCTTC
ACCGGATCCACCCGCGTTGGTCATCAGTTGCTGGAATATTCGGGTCAGTCGAACGGCAAGCCGGTTTGGCTCGAGCTTGG
CGGCAAGAGCCCCAACATCATCTTCGCCGATGTGGACGATATCGACGCTGCGGCCGACATGGCCGCGTTCGGCATCTTCT
TCAACGCGGGCCAGGTTTGCTCGGCGAATTCGCGGCTGCTCGTCCACAGCAGCATCAAGGACGCTCTTCTGGAGCGCCTG
ATCGATCGCGCGAAGAAGATGTATCCCCGCAACCCGCTCGATCCCGAATGCCGCATGGGCGCGCTCGTGGACAACGCGCA
TTTGAGCGGAGTGCAAGGGCATGTAGACCGCGCGACGCAATCGGCACGCCTCGTAACCGGCGGCAAGCGCGCTGACCTGC
ATCCGGGCGGGGCCTTTTTCGAGCCGACCATCTTCGACAATGTCGATCCCCGTTCGCCCCTTGCCACTGAGGAGGTGTTT
GGTCCCGTGCTCGGCATAACGACGTTCGAGGACGAGGAAGAGGCGGTGCGGCTGGCGAACGGTACGCGCTATGGGCTTGC
CGCCTCCGTCTGGACCGGCAGCATCGATCGAGCGCTAAGGATGTCGGATCGCCTCCATGCCGGCACGGTTTCGGTGAACA
CCGTCGATGCGCTCAGCCCCCAGACGCCGTTCGGCGGACTGCGCCAATCCGGCTATGGCCGCGATCTATCCCTCCATTCC
CTCGACAAATATACCGGGCTGAAGACGGTCTGGATCAAATATAGGGGATGA

Protein sequence :
MKTLNDWSELAKGVRFPRALHIDGKSVMAIGGATLSKINPATGDILADVAMGDGGDVDLAVSAARRAFEDGRWSCKSPGE
RRQILLKLAQLIEGDAENLALLESLDMGKPVAEALAIDIPGAAAVWRFYAEAIDKLYDEVAPAARGNLAMIRRVPLGVVA
AIVPWNFPFDMAAWKCAPALAAGNSVVLKPSERSPFTALRLAELAMEAGIPDGVLNVVTGLGSTAGQALGLHSDVDCLAF
TGSTRVGHQLLEYSGQSNGKPVWLELGGKSPNIIFADVDDIDAAADMAAFGIFFNAGQVCSANSRLLVHSSIKDALLERL
IDRAKKMYPRNPLDPECRMGALVDNAHLSGVQGHVDRATQSARLVTGGKRADLHPGGAFFEPTIFDNVDPRSPLATEEVF
GPVLGITTFEDEEEAVRLANGTRYGLAASVWTGSIDRALRMSDRLHAGTVSVNTVDALSPQTPFGGLRQSGYGRDLSLHS
LDKYTGLKTVWIKYRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 9e-92 51
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-58 42
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 9e-59 42
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 9e-59 42
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 9e-59 42
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-58 42
unnamed AAK01506.1 putative aldehyde dehydrogenase Not tested PAGI-1 Protein 1e-65 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sphch_1855 YP_004554045.1 betaine-aldehyde dehydrogenase VFG0082 Protein 6e-59 42