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Name : Sphch_1279 (Sphch_1279) Accession : YP_004553474.1 Strain : Genome accession: NC_015593 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1382017 - 1383561 bp Length : 1545 bp Strand : - Note : TIGRFAM: Type II secretion system gspE; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: sjp:SJA_C1-23550 type II secretory pathway ATPase PulE; SMART: ATPase, AAA+ type, core DNA sequence : GTGAGTGAACCAATATCCGATTTCGCGGAAATCCCCCCGCATATCGCCCCCCGCGCCGTCGACATACCCTATGCCTTCGC CCGCAGGCATGGCGTCGTCATGCTGCCGCTGGACGCCGAACGGCTGACCATCGCCGTCCGCGAAGGCAGCGACCCCCGTA TCCTGCTGGAAGTGCGGCGGCATCTGGCGCGCACCTTCGACGTCCGTTTCGTCGACGCCCCGCAGTTCGACCGGCATCTG TCCGACCATTATGCGATGGAGGGCAGCGCGGCGGCGATGGCCGGTTCCATCGATGTCGGCGCGGACGAACTGGACATGCT CGCCGCAGACATTCCCACGGCGGACGATCTGCTGGACAGCGCGGACGACGCGCCCGCCATCCGCCTGATCAATGGCATCA TCGCGGAAGCGGCGCGGCAAGGCGTGTCGGATATCCACATCGAACCTTATGAGACCGGCCTGATCGTGCGCATGCGCGTC GACGGCGTGCTGCGCGAGACGTTGCGCATGCCCCCGCATGTCGCCCCCGTCGTCGTCAGCCGCATCAAGGTCATGGCCCG GCTCGACATAGCGGAGCGGCGCTTGCCGCAGGACGGGCGGATCGGGCTGGCGCTGGGCGGCAAATTGCTCGACGTGCGCG TGTCGACCCTGCCCAGCCGGGCGGGCGAGCGGGTGGTGCTGCGCATTCTCGACAAGGAGAATGCGGGGATAAACCTCGAC CTGCTGGGCATGGCGGGGGCAGCGGACCGGATTTTCCGGGAGGGCTTGCGGGAACCGAACGGCATCATCCTCGTCACCGG ACCCACGGGATCGGGCAAGACGACGACGCTCTATGCGGGCTTGCGGCAATTGAACGACGGCACGCGCAACATCCTCACCG TCGAAGATCCGGTCGAATATGCGATCGATGGCGTCGGGCAAACCCAGGTGAACGCCAAGGTCGGACTGACCTTCGCGGCA GGCTTGCGGGCGATCCTGCGCCAAGACCCCGATGTGGTGATGGTCGGCGAAATCCGCGACCGCGAGACGGCGGAGATCGC CGTGCAGGCCTCTTTGACGGGGCATCTGGTGCTGTCGACTGTCCACACCAACGATGCGGTCGGCGCGATCACCCGGATTC GCGACATGCGCGTGGAACCGTTCCTGCTCGCCTCGACCCTCCGCGCCGTCATCGCGCAGCGGCTGGTGCGCAGGCTGTGC CAGCATTGCCGCGAGCCGGTGCAGGCGGACAAGTCGGCCAGCGCGCTCCTGGGCTTCGATTTAGGCACCATCATCTGCCG GGCGCGGGGGTGCGAGGAATGCAACGGCTCCGGCTATAAGGGCCGGATCGGCGTGTTCGAGGCGATCCGGGTGGACGACA CCATTCGCCGCCTGATCAACGACGGCGGCGATGAATCGCTGATCGCGCGCCATGCTTTCCTGAACGCGCCCAATCTGGGC TCTGCGGCGCGGGCGCTGGTGCGCGACGGCCAGACCACGGCGGAGGAAGCCATCCGCGTGTCCCGGCGCGACGCGGCGGA GGCGGAAATCATCGCCGATGGCTGA Protein sequence : MSEPISDFAEIPPHIAPRAVDIPYAFARRHGVVMLPLDAERLTIAVREGSDPRILLEVRRHLARTFDVRFVDAPQFDRHL SDHYAMEGSAAAMAGSIDVGADELDMLAADIPTADDLLDSADDAPAIRLINGIIAEAARQGVSDIHIEPYETGLIVRMRV DGVLRETLRMPPHVAPVVVSRIKVMARLDIAERRLPQDGRIGLALGGKLLDVRVSTLPSRAGERVVLRILDKENAGINLD LLGMAGAADRIFREGLREPNGIILVTGPTGSGKTTTLYAGLRQLNDGTRNILTVEDPVEYAIDGVGQTQVNAKVGLTFAA GLRAILRQDPDVVMVGEIRDRETAEIAVQASLTGHLVLSTVHTNDAVGAITRIRDMRVEPFLLASTLRAVIAQRLVRRLC QHCREPVQADKSASALLGFDLGTIICRARGCEECNGSGYKGRIGVFEAIRVDDTIRRLINDGGDESLIARHAFLNAPNLG SAARALVRDGQTTAEEAIRVSRRDAAEAEIIADG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-107 | 51 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-107 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sphch_1279 | YP_004553474.1 | general secretory pathway protein E | VFG0182 | Protein | 1e-113 | 55 |
| Sphch_1279 | YP_004553474.1 | general secretory pathway protein E | VFG1876 | Protein | 5e-111 | 51 |
| Sphch_1279 | YP_004553474.1 | general secretory pathway protein E | VFG2048 | Protein | 5e-108 | 51 |
| Sphch_1279 | YP_004553474.1 | general secretory pathway protein E | VFG2426 | Protein | 2e-76 | 50 |
